Variant report

Variant	rs10992303
Chromosome Location	chr9:95082804-95082805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95082668-95082896	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95051112..95065542-chr9:95079443..95091389,38	K562	blood:

Variant related genes	Relation type
CENPP	TF binding region
NOL8	TF binding region
ENSG00000198000	Chromatin interaction
ENSG00000196305	Chromatin interaction
ENSG00000239183	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:141)

rs_ID	r²[population]
rs10115222	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116241	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs10116813	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117627	0.81[AFR][1000 genomes]
rs10119535	0.82[GIH][hapmap]
rs10120980	0.94[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10121495	0.86[EUR][1000 genomes]
rs10123342	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125474	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283572	0.91[CEU][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10429459	0.94[ASW][hapmap];0.87[CEU][hapmap];0.97[LWK][hapmap];0.96[YRI][hapmap]
rs10453241	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10514815	0.94[ASW][hapmap];0.87[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs1053441	0.91[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1053446	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10739927	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs10739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761147	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761150	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761151	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.88[EUR][1000 genomes]
rs10761154	0.91[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10761155	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10761158	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs10761160	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10820960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820961	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820963	0.82[GIH][hapmap]
rs10820964	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs10820965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820968	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820969	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs10820971	0.91[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs10820980	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs10992273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992280	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992291	0.88[EUR][1000 genomes]
rs10992304	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992319	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992322	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10992340	0.81[EUR][1000 genomes]
rs10992347	0.87[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs10992349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs1121978	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1121979	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1133908	0.90[EUR][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788523	0.92[ASN][1000 genomes]
rs11790258	0.93[CHD][hapmap]
rs11791001	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11792019	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11792342	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11794346	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12336415	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12336884	0.90[ASN][1000 genomes]
rs12338938	0.82[CEU][hapmap]
rs12341817	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs12342019	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs12343820	0.83[CEU][hapmap];0.96[YRI][hapmap]
rs12353096	0.88[EUR][1000 genomes]
rs13301537	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1447114	0.82[GIH][hapmap]
rs1535754	0.94[ASW][hapmap];0.87[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs1535756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs1924243	0.80[JPT][hapmap];0.96[YRI][hapmap]
rs1980848	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs2007837	0.82[EUR][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs2151618	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2295941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2296666	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs2296667	0.92[CEU][hapmap];0.87[YRI][hapmap]
rs2516567	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs2516568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761677	0.98[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2761679	0.82[EUR][1000 genomes]
rs2761681	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739606	0.94[ASW][hapmap];0.87[CEU][hapmap];0.97[LWK][hapmap];0.96[YRI][hapmap]
rs3758229	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780345	0.80[ASN][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs4743873	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs4744133	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs4744134	0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs4744135	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs4744136	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs6479416	0.90[EUR][1000 genomes]
rs6479417	0.92[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs6479418	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs6479420	0.86[EUR][1000 genomes]
rs6479422	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs7020874	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7022562	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7024190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026361	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs7027595	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029879	0.83[ASN][1000 genomes]
rs7030920	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031567	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs7033979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs7040949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045409	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs7045451	0.85[EUR][1000 genomes]
rs7045572	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7047089	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes]
rs710162	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs7847929	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs7848055	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848472	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs7850432	0.83[ASW][hapmap];0.92[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7850528	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7853859	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs7856204	0.84[EUR][1000 genomes]
rs7860786	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs7863406	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs7867909	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7868013	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs7869742	0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs7872375	0.92[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7873932	0.92[CEU][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes]
rs8067	0.83[ASW][hapmap];0.92[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs927865	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs9299403	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs968040	0.88[ASW][hapmap];0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.83[JPT][hapmap];0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10992303	IPPK	cis	cerebellum	SCAN
rs10992303	IARS	cis	parietal	SCAN
rs10992303	ZNF484	cis	cerebellum	SCAN
rs10992303	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs10992303	CENPP	cis	parietal	SCAN
rs10992303	CENPP	cis	cerebellum	SCAN
rs10992303	ZNF484	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95056800-95086800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:95057000-95087000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:95058000-95086200	Weak transcription	Stomach Mucosa	stomach
4	chr9:95058200-95085800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr9:95058400-95085600	Strong transcription	Placenta	Placenta
6	chr9:95058400-95085800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:95058400-95085800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:95058400-95086200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:95058600-95085800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:95058600-95085800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:95059200-95085600	Strong transcription	Duodenum Mucosa	Duodenum
12	chr9:95059200-95085600	Strong transcription	Fetal Intestine Large	intestine
13	chr9:95059200-95085800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr9:95059200-95085800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:95059400-95085600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:95059400-95085600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:95059400-95085800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:95059400-95085800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:95059600-95085600	Strong transcription	Primary T cells from cord blood	blood
20	chr9:95060000-95085600	Strong transcription	Fetal Muscle Trunk	muscle
21	chr9:95060200-95083200	Strong transcription	Fetal Muscle Leg	muscle
22	chr9:95062200-95085800	Strong transcription	Primary B cells from peripheral blood	blood
23	chr9:95062800-95083600	Strong transcription	Primary B cells from cord blood	blood
24	chr9:95072000-95085800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:95073200-95086600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr9:95075000-95085600	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr9:95075200-95085600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:95075400-95085600	Strong transcription	Adipose Nuclei	Adipose
29	chr9:95075400-95085600	Strong transcription	Brain Hippocampus Middle	brain
30	chr9:95075400-95085800	Strong transcription	Fetal Thymus	thymus
31	chr9:95075400-95086200	Strong transcription	A549	lung
32	chr9:95075600-95083000	Strong transcription	Fetal Brain Female	brain
33	chr9:95075600-95085800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:95075600-95085800	Strong transcription	NH-A	brain
35	chr9:95075800-95083000	Strong transcription	Brain Germinal Matrix	brain
36	chr9:95075800-95085400	Strong transcription	HepG2	liver
37	chr9:95075800-95085600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:95076000-95083800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr9:95076000-95085600	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr9:95076000-95085800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr9:95076000-95085800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr9:95076200-95083400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:95076200-95085000	Strong transcription	Hela-S3	cervix
44	chr9:95076200-95085800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:95076200-95085800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:95076400-95085600	Strong transcription	Brain Anterior Caudate	brain
47	chr9:95076400-95085800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr9:95076400-95085800	Strong transcription	Liver	Liver
49	chr9:95076600-95084000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr9:95076600-95085600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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