Variant report

Variant	rs1535754
Chromosome Location	chr9:95201917-95201918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95200885..95202422-chr9:95207460..95209970,2	K562	blood:
2	chr9:95104923..95105728-chr9:95201175..95201972,2	MCF-7	breast:
3	chr9:95104863..95105872-chr9:95201522..95202100,3	MCF-7	breast:
4	chr9:95179422..95181955-chr9:95199838..95202240,2	MCF-7	breast:

Extended variants
information (count: 182 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:178)

rs_ID	r²[population]
rs10115222	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10115290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116241	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs10116813	0.91[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs10117627	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10117680	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10118107	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10118939	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10120980	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs10121495	0.92[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10123738	0.82[ASN][1000 genomes]
rs10125450	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10125474	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs10283572	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10429459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453241	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1053441	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1053446	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10739927	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs10739928	0.87[CEU][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs1075397	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10761150	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10761153	0.95[ASN][1000 genomes]
rs10761154	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10761155	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10761156	0.81[JPT][hapmap]
rs10761158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761160	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10761161	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10761164	0.96[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10820960	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs10820961	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10820964	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs10820965	0.87[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs10820966	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10820967	0.82[ASW][hapmap];0.80[MEX][hapmap];0.87[YRI][hapmap]
rs10820968	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs10820969	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10820971	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10820980	0.91[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10820986	0.92[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10820989	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10820990	0.82[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap]
rs10992291	0.87[ASN][1000 genomes]
rs10992303	0.94[ASW][hapmap];0.87[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs10992304	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap]
rs10992322	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992340	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992349	0.91[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992365	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992375	0.80[EUR][1000 genomes]
rs1121978	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1121979	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1133908	0.90[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11788523	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11789163	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11792019	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11794346	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11795122	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12335553	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12336415	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12336884	0.83[EUR][1000 genomes]
rs12338938	0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12341817	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12342019	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12343820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12348488	0.85[ASN][1000 genomes]
rs12353096	0.87[ASN][1000 genomes]
rs13301492	0.83[EUR][1000 genomes]
rs13301537	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13301652	0.84[EUR][1000 genomes]
rs1535756	0.91[CEU][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924244	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980848	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2007837	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025388	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2026585	0.96[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes]
rs2104533	0.82[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2236341	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs2273862	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs2274966	0.88[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2295941	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs2296666	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296667	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2296669	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs230222	0.81[JPT][hapmap]
rs2516567	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516568	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs2761677	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2761679	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2761681	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2895219	0.82[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3118008	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758229	0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs3780347	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3927488	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743873	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4743874	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744133	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[ASN][1000 genomes]
rs4744135	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744136	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4744137	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs4744138	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs4744139	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4744141	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.90[ASN][1000 genomes]
rs6479417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6479419	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6479420	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.91[CEU][hapmap];0.87[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6479423	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020874	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7022562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7023004	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7024190	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7026361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7030920	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs7031567	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7033979	0.91[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7037075	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap]
rs7037194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7042335	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7043152	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7045409	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045572	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7047089	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs710162	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs724102	0.83[CEU][hapmap]
rs747628	0.81[EUR][1000 genomes]
rs747629	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7847534	0.81[EUR][1000 genomes]
rs7847929	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[ASN][1000 genomes]
rs7848391	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap]
rs7849788	0.84[EUR][1000 genomes]
rs7849927	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7850432	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7850528	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7852698	0.87[CEU][hapmap]
rs7853859	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7856204	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7860774	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7860786	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863049	0.83[EUR][1000 genomes]
rs7863234	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863406	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs7864575	0.91[CEU][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs7864630	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7865019	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs7868013	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7868640	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7869742	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7872375	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7872610	0.81[EUR][1000 genomes]
rs7872644	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7873390	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7873932	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8067	0.88[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs927865	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9299403	0.94[ASW][hapmap];0.87[CEU][hapmap];0.97[LWK][hapmap];0.96[YRI][hapmap]
rs9299404	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9299405	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs968040	0.82[ASW][hapmap];0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs987553	0.81[EUR][1000 genomes]
rs987554	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1535754	CENPP	cis	Esophagus Muscularis	GTEx
rs1535754	CENPP	cis	parietal	SCAN
rs1535754	ZNF484	cis	cerebellum	SCAN
rs1535754	CENPP	cis	cerebellum	SCAN
rs1535754	CENPP	cis	lymphoblastoid	seeQTL
rs1535754	ZNF484	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95186200-95202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:95201000-95203800	Weak transcription	Stomach Mucosa	stomach
3	chr9:95201200-95202000	Enhancers	Colon Smooth Muscle	Colon
4	chr9:95201200-95202000	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:95201200-95202400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:95201600-95202600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:95201600-95202600	Enhancers	HSMM	muscle
8	chr9:95201600-95203000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:95201600-95204000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr9:95201800-95202200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:95201800-95202200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:95201800-95202200	Enhancers	NHEK	skin
13	chr9:95201800-95202400	Enhancers	Hela-S3	cervix
14	chr9:95201800-95202400	Enhancers	NH-A	brain
15	chr9:95201800-95202600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:95201800-95202600	Enhancers	Fetal Muscle Leg	muscle
17	chr9:95201800-95202600	Enhancers	HMEC	breast
18	chr9:95201800-95202600	Enhancers	NHDF-Ad	bronchial
19	chr9:95201800-95202600	Enhancers	Osteobl	bone
20	chr9:95201800-95203000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:95201800-95203200	Enhancers	HSMMtube	muscle

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