Variant report

Variant	rs2516567
Chromosome Location	chr9:95187418-95187419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr9:95187330-95188475	SK-N-SH	brain:	n/a	n/a
2	NFIC	chr9:95187211-95188399	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr9:95187335-95188306	SH-SY5Y	brain:	n/a	chr9:95187462-95187471
4	EP300	chr9:95187391-95189484	SK-N-SH	brain:	n/a	chr9:95187474-95187488
5	GATA3	chr9:95187144-95188397	SK-N-SH	brain:	n/a	chr9:95187462-95187471
6	GATA3	chr9:95187154-95188633	SK-N-SH	brain:	n/a	chr9:95187462-95187471
7	TCF12	chr9:95187167-95188484	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
OMD	TF binding region

Extended variants
information (count: 168 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10115222	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10115290	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10116241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10117627	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10118939	0.88[CEU][hapmap]
rs10120329	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10120980	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs10121495	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs10123738	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10125474	0.92[CEU][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10429459	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10514815	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739928	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10761150	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes]
rs10761151	0.81[EUR][1000 genomes]
rs10761153	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761155	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs10761156	0.81[JPT][hapmap]
rs10761158	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761161	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761164	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10820960	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs10820961	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs10820964	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10820965	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10820966	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs10820967	0.83[ASW][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820968	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820986	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10820988	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10820990	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992273	0.81[EUR][1000 genomes]
rs10992280	0.81[EUR][1000 genomes]
rs10992291	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10992303	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs10992304	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10992319	0.83[EUR][1000 genomes]
rs10992322	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992340	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs1121978	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1121979	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1133908	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11789163	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11792342	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11794346	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs11795122	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12335553	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12336415	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12338938	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12341817	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12342019	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12348488	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12353096	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13301537	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1535754	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1924244	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1980848	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2007837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025388	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2026585	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs2104533	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs2236341	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs2273862	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs2274966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2295941	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs2296666	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2296667	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296669	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs230222	0.81[JPT][hapmap]
rs2516568	0.91[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2761679	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2761681	0.94[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[LWK][hapmap];0.80[MEX][hapmap];0.97[MKK][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2895219	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs3118008	0.99[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs3780347	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4302908	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743873	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4743874	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4744133	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4744134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744135	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4744136	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744137	0.88[CEU][hapmap]
rs4744138	0.81[ASW][hapmap];0.83[CEU][hapmap];0.80[MEX][hapmap]
rs4744141	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479418	0.82[EUR][1000 genomes]
rs6479419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479420	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479423	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7020874	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7022562	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap]
rs7023004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7024190	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs7026361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs7030920	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7031567	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7037075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7037194	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap]
rs7040949	0.81[EUR][1000 genomes]
rs7042335	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs7043152	0.88[ASW][hapmap];0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7045409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045572	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs710162	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs747629	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.82[ASN][1000 genomes]
rs7847929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7848055	0.81[EUR][1000 genomes]
rs7848391	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.83[TSI][hapmap]
rs7850432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7850528	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7852510	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7853859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856204	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7860774	0.91[ASN][1000 genomes]
rs7860786	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7863234	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7863406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7864575	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7864630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7865019	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7867909	0.82[EUR][1000 genomes]
rs7868013	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7868640	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8067	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927865	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9299403	0.83[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.84[TSI][hapmap];0.91[YRI][hapmap];0.81[EUR][1000 genomes]
rs9299404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9299405	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs968040	0.81[ASW][hapmap];0.87[CEU][hapmap]
rs987554	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs2516567	ZNF484	cis	parietal	SCAN
rs2516567	ZNF484	cis	cerebellum	SCAN
rs2516567	OGN	cis	Nerve Tibial	GTEx
rs2516567	CENPP	cis	cerebellum	SCAN
rs2516567	OGN	cis	parietal	SCAN
rs2516567	IPPK	cis	cerebellum	SCAN
rs2516567	ECM2	cis	cerebellum	SCAN
rs2516567	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs2516567	CENPP	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95173200-95188400	Weak transcription	Fetal Heart	heart
2	chr9:95183800-95189000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:95185400-95188400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr9:95185400-95188800	Weak transcription	Fetal Kidney	kidney
5	chr9:95185600-95188000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:95186000-95188200	Active TSS	Ovary	ovary
7	chr9:95186200-95188400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:95186200-95202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:95186600-95189400	Enhancers	Fetal Lung	lung
10	chr9:95186800-95188000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:95186800-95188800	Enhancers	NHLF	lung
12	chr9:95186800-95189000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:95187000-95189000	Enhancers	NHDF-Ad	bronchial
14	chr9:95187000-95189400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:95187000-95190600	Enhancers	Fetal Stomach	stomach
16	chr9:95187200-95188600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:95187200-95188800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:95187200-95189000	Enhancers	Rectal Smooth Muscle	rectum
19	chr9:95187400-95187600	Enhancers	Adipose Nuclei	Adipose
20	chr9:95187400-95188400	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:95187400-95189200	Enhancers	Colon Smooth Muscle	Colon
22	chr9:95187400-95189400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:95187400-95192200	Weak transcription	Aorta	Aorta

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