Variant report

Variant	rs1053446
Chromosome Location	chr9:95146761-95146762
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95056921..95058643-chr9:95144243..95146810,2	K562	blood:
2	chr9:95111056..95113852-chr9:95145115..95147395,2	K562	blood:

Extended variants
information (count: 168 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs10115222	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10115290	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10116241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10117627	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10118939	0.88[CEU][hapmap]
rs10120329	0.83[EUR][1000 genomes]
rs10120980	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10121495	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10123342	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10123738	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10125474	0.92[CEU][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10429459	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514815	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10739927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10739928	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs10761147	0.81[EUR][1000 genomes]
rs10761150	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs10761151	0.82[EUR][1000 genomes]
rs10761153	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761155	0.88[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs10761156	0.81[JPT][hapmap]
rs10761158	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10761161	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761164	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs10820960	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs10820961	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs10820964	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10820965	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820966	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10820967	0.80[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs10820968	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap];0.92[YRI][hapmap]
rs10820986	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820988	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820990	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992273	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes]
rs10992280	0.82[EUR][1000 genomes]
rs10992291	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10992303	0.92[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs10992304	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10992319	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10992322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992340	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap];0.92[YRI][hapmap]
rs1121978	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1121979	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1133908	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1152759	0.82[JPT][hapmap]
rs11789163	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11792342	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11794346	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs11795122	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12335553	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12336415	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs12338938	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12341817	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs12342019	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12348488	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12353096	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13301537	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs1535754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1924244	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1980848	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs2007837	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2026585	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.88[CEU][hapmap]
rs2104533	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2236341	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs2273862	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs2274966	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295941	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs2296666	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2296667	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs230222	0.81[JPT][hapmap]
rs2516567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516568	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2761679	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2761681	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2895219	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs3118008	0.96[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs3780347	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4302908	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4743873	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs4743874	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs4744133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4744134	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744135	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4744136	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4744137	0.88[CEU][hapmap]
rs4744138	0.83[CEU][hapmap]
rs6479416	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479418	0.83[EUR][1000 genomes]
rs6479419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479420	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6479422	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs6479423	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7020874	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7022562	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7023004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7024190	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs7026361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027595	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7030920	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7031567	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs7037075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7037194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7040949	0.92[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.80[EUR][1000 genomes]
rs7042335	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs7043152	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7045409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7045572	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs710162	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs747629	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7847929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848055	0.83[EUR][1000 genomes]
rs7848391	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7850432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7850528	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7852510	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7853859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7856204	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7860774	0.88[ASN][1000 genomes]
rs7860786	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7863234	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7863406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7864575	0.88[CEU][hapmap]
rs7864630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7865019	0.88[CEU][hapmap]
rs7867909	0.84[EUR][1000 genomes]
rs7868013	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs7868640	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7873397	0.92[CEU][hapmap];0.92[YRI][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8067	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs927865	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9299403	0.91[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs9299404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299405	0.88[CEU][hapmap]
rs968040	0.87[CEU][hapmap]
rs987554	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1053446	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs1053446	OGN	cis	Nerve Tibial	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95135200-95149800	Weak transcription	Primary B cells from cord blood	blood
2	chr9:95135600-95148000	Weak transcription	Ovary	ovary
3	chr9:95138000-95152400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:95139000-95163200	Weak transcription	Aorta	Aorta
5	chr9:95140400-95148000	Weak transcription	Fetal Stomach	stomach
6	chr9:95142000-95159400	Weak transcription	Fetal Intestine Large	intestine
7	chr9:95142200-95165600	Weak transcription	Fetal Thymus	thymus
8	chr9:95143800-95148000	Weak transcription	Dnd41	blood
9	chr9:95144200-95146800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:95144200-95158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:95145000-95163800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:95145600-95146800	Strong transcription	Fetal Lung	lung
13	chr9:95146200-95147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:95146200-95148000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:95146200-95148600	Enhancers	NH-A	brain
16	chr9:95146200-95148600	Enhancers	Osteobl	bone
17	chr9:95146400-95146800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr9:95146400-95146800	Enhancers	Colon Smooth Muscle	Colon
19	chr9:95146400-95146800	Flanking Active TSS	NHDF-Ad	bronchial
20	chr9:95146400-95147000	Enhancers	HMEC	breast
21	chr9:95146400-95147200	Enhancers	HSMM	muscle
22	chr9:95146400-95147400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:95146400-95147800	Enhancers	Hela-S3	cervix
24	chr9:95146400-95148000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr9:95146400-95148400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:95146400-95149000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95146600-95146800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:95146600-95146800	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr9:95146600-95146800	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:95146600-95147800	Enhancers	NHEK	skin
31	chr9:95146600-95148000	Enhancers	A549	lung
32	chr9:95146600-95148200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:95146600-95149000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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