Variant report

Variant	rs2296666
Chromosome Location	chr9:95274261-95274262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95127021..95128965-chr9:95271997..95274273,2	K562	blood:
2	chr9:95266639..95268183-chr9:95274225..95275863,2	K562	blood:
3	chr9:95269994..95273497-chr9:95274133..95276340,3	K562	blood:
4	chr9:95268933..95272966-chr9:95273116..95276340,3	K562	blood:
5	chr9:95268662..95271530-chr9:95273359..95275771,3	MCF-7	breast:

Extended variants
information (count: 175 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10114912	0.88[EUR][1000 genomes]
rs10114932	0.86[EUR][1000 genomes]
rs10115222	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs10115290	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10116241	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs10116813	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs10117627	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10117680	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10118107	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10118939	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs10121495	0.88[ASN][1000 genomes]
rs10123342	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs10123738	0.80[ASN][1000 genomes]
rs10125450	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10283572	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10429459	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10453241	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10514815	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1053441	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1053446	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10739927	0.86[ASN][1000 genomes]
rs1075397	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10761153	0.88[ASN][1000 genomes]
rs10761154	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10761155	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap]
rs10761158	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761160	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10761161	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10761163	0.88[EUR][1000 genomes]
rs10761164	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10820964	0.83[ASN][1000 genomes]
rs10820965	0.80[AFR][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10820968	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs10820969	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs10820971	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10820980	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10820986	0.92[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs10820989	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10820990	0.92[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes]
rs10820994	0.85[EUR][1000 genomes]
rs10992291	0.83[ASN][1000 genomes]
rs10992303	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs10992304	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]
rs10992322	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10992340	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992347	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992349	0.91[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992365	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992366	0.88[EUR][1000 genomes]
rs10992375	0.88[EUR][1000 genomes]
rs10992393	0.87[CEU][hapmap]
rs1121978	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1121979	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs1133908	0.86[ASN][1000 genomes]
rs11788523	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11789163	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11792019	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11794346	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11795122	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12335553	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12336415	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12336884	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12338938	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12341817	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12342019	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12343820	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12353096	0.83[ASN][1000 genomes]
rs13301492	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13301537	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13301652	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535754	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1535756	0.91[CEU][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs1924243	0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1924244	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980848	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2007837	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2026585	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2094281	0.88[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs2104533	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2296667	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2296669	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs2516567	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2516568	0.87[CEU][hapmap];0.95[YRI][hapmap]
rs2761677	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2761679	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2761681	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs2895219	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3118008	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3739606	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758229	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs3780347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3927488	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4302908	0.81[AMR][1000 genomes]
rs4743873	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743874	0.95[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4743875	0.87[CEU][hapmap]
rs4744133	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744134	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs4744135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744136	0.83[ASW][hapmap];0.96[CEU][hapmap];0.80[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4744137	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs4744138	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs4744139	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744141	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs62572543	0.81[EUR][1000 genomes]
rs6479416	0.86[ASN][1000 genomes]
rs6479417	0.86[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6479420	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6479422	0.94[ASW][hapmap];0.91[CEU][hapmap];0.90[LWK][hapmap];0.80[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6479423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020104	0.87[CEU][hapmap]
rs7020874	0.83[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7022562	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7026361	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs7027595	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs7029939	0.88[EUR][1000 genomes]
rs7030920	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs7031567	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7033979	0.91[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap]
rs7042335	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs7043152	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs7045409	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7045572	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs7047089	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs710162	0.89[ASN][1000 genomes]
rs724102	0.83[CEU][hapmap]
rs747628	0.89[EUR][1000 genomes]
rs747629	0.83[ASW][hapmap];0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7847534	0.89[EUR][1000 genomes]
rs7847929	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs7848391	0.92[CEU][hapmap];0.80[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap]
rs7849788	0.91[EUR][1000 genomes]
rs7849927	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7850432	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7850528	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7852510	0.81[AMR][1000 genomes]
rs7852698	0.87[CEU][hapmap]
rs7853859	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7856204	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7860774	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7860786	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863049	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7863234	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7863406	0.86[ASN][1000 genomes]
rs7864575	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7865019	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs7868013	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7868640	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7869521	0.87[CEU][hapmap]
rs7869742	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7872375	0.86[ASN][1000 genomes]
rs7872610	0.89[EUR][1000 genomes]
rs7872644	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7873390	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7873397	0.91[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7873932	0.86[ASN][1000 genomes]
rs8067	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs927865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9299405	0.88[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs968040	0.88[ASW][hapmap];0.91[CEU][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs987553	0.89[EUR][1000 genomes]
rs987554	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs2296666	CENPP	cis	cerebellum	SCAN
rs2296666	RP11-19J3.3	cis	multi-tissue	Pritchard
rs2296666	CENPP	cis	parietal	SCAN
rs2296666	ZNF484	cis	cerebellum	SCAN
rs2296666	CENPP	cis	Nerve Tibial	GTEx
rs2296666	CENPP	cis	lymphoblastoid	seeQTL
rs2296666	CENPP	cis	Esophagus Muscularis	GTEx
rs2296666	ZNF484	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95255000-95274600	Weak transcription	Liver	Liver
2	chr9:95268600-95278600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:95269400-95274600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:95269800-95298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:95270400-95275400	Weak transcription	Aorta	Aorta
6	chr9:95270400-95281000	Weak transcription	Thymus	Thymus
7	chr9:95270600-95274400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:95270600-95275200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:95270600-95275200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:95270600-95275400	Weak transcription	Psoas Muscle	Psoas
11	chr9:95270600-95275400	Weak transcription	Right Ventricle	heart
12	chr9:95270800-95274400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:95270800-95274600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:95270800-95274600	Weak transcription	Fetal Intestine Large	intestine
15	chr9:95270800-95278400	Weak transcription	Esophagus	oesophagus
16	chr9:95270800-95284800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:95271000-95275200	Weak transcription	Fetal Stomach	stomach
18	chr9:95271000-95275200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:95271000-95275400	Weak transcription	Fetal Heart	heart
20	chr9:95271200-95284800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:95271400-95274400	Weak transcription	Fetal Kidney	kidney
22	chr9:95271400-95275000	Weak transcription	Ovary	ovary
23	chr9:95271600-95279200	Weak transcription	Gastric	stomach
24	chr9:95271600-95285600	Weak transcription	Left Ventricle	heart
25	chr9:95271800-95274400	Weak transcription	Adipose Nuclei	Adipose
26	chr9:95271800-95275400	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:95273000-95274400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:95273200-95274800	Weak transcription	Osteobl	bone
29	chr9:95273400-95279400	Weak transcription	Pancreas	Pancrea
30	chr9:95273800-95274600	Enhancers	NHEK	skin
31	chr9:95274000-95274800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:95274000-95276000	Enhancers	Colon Smooth Muscle	Colon
33	chr9:95274000-95276000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr9:95274000-95276000	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:95274000-95276000	Enhancers	Stomach Smooth Muscle	stomach
36	chr9:95274200-95274400	Enhancers	NHDF-Ad	bronchial
37	chr9:95274200-95274600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:95274200-95274600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:95274200-95275400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:95274200-95275400	Strong transcription	Fetal Lung	lung
41	chr9:95274200-95275400	Enhancers	NH-A	brain
42	chr9:95274200-95275800	Enhancers	Fetal Intestine Small	intestine

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