Variant report

Variant	rs4744133
Chromosome Location	chr9:95226702-95226703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95056040..95058266-chr9:95225229..95227656,2	K562	blood:
2	chr9:95225938..95227889-chr9:95230551..95232257,2	K562	blood:

Extended variants
information (count: 183 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10114912	0.81[EUR][1000 genomes]
rs10115222	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10115290	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116241	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116813	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs10117627	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10117680	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10118107	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10118939	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10121495	0.92[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10123738	0.82[ASN][1000 genomes]
rs10125450	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10283572	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10429459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10453241	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10514815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1053441	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1053446	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10739927	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs10739928	0.87[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs1075397	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761153	0.95[ASN][1000 genomes]
rs10761154	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10761155	1.00[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10761156	0.81[JPT][hapmap]
rs10761158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761160	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10761161	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10761163	0.81[EUR][1000 genomes]
rs10761164	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10820964	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[ASN][1000 genomes]
rs10820965	0.87[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs10820966	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10820967	0.82[ASW][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.87[YRI][hapmap]
rs10820968	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs10820969	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10820971	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10820980	0.91[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10820986	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs10820989	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10820990	0.82[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.80[AMR][1000 genomes]
rs10992291	0.87[ASN][1000 genomes]
rs10992303	0.94[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap]
rs10992304	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap]
rs10992322	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992340	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10992347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992349	0.91[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992365	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992366	0.81[EUR][1000 genomes]
rs10992375	0.83[EUR][1000 genomes]
rs10992393	0.87[CEU][hapmap]
rs1121978	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1121979	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1133908	0.90[ASN][1000 genomes]
rs1152759	0.81[JPT][hapmap]
rs11788523	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11789163	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11792019	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11794346	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11795122	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12335553	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12336415	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12336884	0.84[EUR][1000 genomes]
rs12338938	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12341817	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12342019	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.94[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12343820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12348488	0.85[ASN][1000 genomes]
rs12353096	0.87[ASN][1000 genomes]
rs13301492	0.85[EUR][1000 genomes]
rs13301537	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13301652	0.87[EUR][1000 genomes]
rs1535754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1535756	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs1924243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1980848	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2007837	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2025388	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2025389	0.81[JPT][hapmap]
rs2026585	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2031262	0.81[JPT][hapmap]
rs2094281	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes]
rs2104533	0.82[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2274966	0.88[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2295941	0.87[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs2296666	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296667	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2296669	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs230222	0.81[JPT][hapmap]
rs2516567	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2516568	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs2761677	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2761679	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2761681	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2895219	0.82[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3118008	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3174352	0.81[JPT][hapmap]
rs331380	0.81[JPT][hapmap]
rs3739606	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758229	0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs3780347	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3927488	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4302908	0.80[AMR][1000 genomes]
rs4743873	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4743874	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4743875	0.87[CEU][hapmap]
rs4744134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4744135	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744136	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4744137	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs4744138	0.82[ASW][hapmap];0.87[CEU][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes]
rs4744139	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744141	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.90[ASN][1000 genomes]
rs6479417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6479419	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs6479420	0.92[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.87[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479423	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020104	0.87[CEU][hapmap]
rs7020874	0.88[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7022562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7023004	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs7026361	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7029939	0.81[EUR][1000 genomes]
rs7030920	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap]
rs7031567	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7033979	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7037075	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs7037194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7042335	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7043152	0.88[ASW][hapmap];0.87[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7045409	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7045572	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7047089	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs710162	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs724102	0.83[CEU][hapmap]
rs747628	0.82[EUR][1000 genomes]
rs747629	0.88[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7847534	0.82[EUR][1000 genomes]
rs7847929	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs7848391	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap]
rs7849788	0.86[EUR][1000 genomes]
rs7849927	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7850432	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7850528	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7852510	0.80[AMR][1000 genomes]
rs7852698	0.87[CEU][hapmap]
rs7853859	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7856204	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7860774	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7860786	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863049	0.85[EUR][1000 genomes]
rs7863234	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7863406	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[ASN][1000 genomes]
rs7864575	0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes]
rs7864630	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7865019	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs7868013	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7868640	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7869521	0.87[CEU][hapmap]
rs7869742	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7872375	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7872610	0.82[EUR][1000 genomes]
rs7872644	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7873390	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7873932	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs8067	0.88[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927865	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9299404	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9299405	0.82[ASW][hapmap];0.91[CEU][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes]
rs968040	0.82[ASW][hapmap];0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs987553	0.82[EUR][1000 genomes]
rs987554	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4744133	CENPP	cis	lymphoblastoid	seeQTL
rs4744133	CENPP	cis	cerebellum	SCAN
rs4744133	RP11-19J3.3	cis	multi-tissue	Pritchard
rs4744133	ZNF484	cis	cerebellum	SCAN
rs4744133	CENPP	cis	parietal	SCAN
rs4744133	CENPP	cis	Esophagus Muscularis	GTEx
rs4744133	ZNF484	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95219000-95241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:95220200-95229400	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:95220200-95242400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:95225200-95227000	Enhancers	Aorta	Aorta
5	chr9:95225200-95227400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:95225400-95227000	Strong transcription	Fetal Muscle Trunk	muscle
7	chr9:95225400-95227000	Enhancers	Ovary	ovary
8	chr9:95225400-95227400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:95225400-95227600	Enhancers	Fetal Heart	heart
10	chr9:95225400-95227600	Enhancers	Rectal Smooth Muscle	rectum
11	chr9:95225400-95227600	Genic enhancers	Stomach Smooth Muscle	stomach
12	chr9:95225600-95227000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:95225600-95235400	Weak transcription	Pancreas	Pancrea
14	chr9:95225800-95227000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:95225800-95227000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:95225800-95227000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:95225800-95227000	Enhancers	HSMM	muscle
18	chr9:95225800-95227000	Enhancers	HSMMtube	muscle
19	chr9:95225800-95227200	Enhancers	NH-A	brain
20	chr9:95225800-95227600	Enhancers	Colon Smooth Muscle	Colon
21	chr9:95226000-95227000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:95226200-95226800	Enhancers	NHEK	skin
23	chr9:95226200-95227000	Genic enhancers	Fetal Stomach	stomach
24	chr9:95226200-95227400	Enhancers	Psoas Muscle	Psoas
25	chr9:95226400-95226800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:95226400-95226800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:95226400-95226800	Enhancers	Placenta	Placenta
28	chr9:95226400-95226800	Enhancers	Gastric	stomach
29	chr9:95226400-95226800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr9:95226400-95227000	Enhancers	Brain Anterior Caudate	brain
31	chr9:95226400-95227000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr9:95226400-95227000	Enhancers	Right Ventricle	heart
33	chr9:95226400-95227200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:95226400-95227200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:95226400-95227400	Enhancers	Left Ventricle	heart
36	chr9:95226400-95227600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:95226600-95226800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr9:95226600-95226800	Enhancers	Brain Hippocampus Middle	brain
39	chr9:95226600-95226800	Flanking Active TSS	NHLF	lung
40	chr9:95226600-95226800	Flanking Active TSS	Osteobl	bone
41	chr9:95226600-95227400	Enhancers	NHDF-Ad	bronchial
42	chr9:95226600-95228800	Weak transcription	Hela-S3	cervix

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