Variant report

Variant	rs3118008
Chromosome Location	chr9:95180375-95180376
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95175562..95177754-chr9:95179592..95182058,2	K562	blood:
2	chr9:95179674..95182574-chr9:95182721..95184992,2	MCF-7	breast:
3	chr9:95178951..95181323-chr9:95182899..95185671,2	K562	blood:
4	chr9:95179422..95181955-chr9:95199838..95202240,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10115290	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10116241	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10117627	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10121495	0.94[ASN][1000 genomes]
rs10283572	0.95[ASN][1000 genomes]
rs10429459	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10453241	0.96[ASN][1000 genomes]
rs10514815	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1053441	0.99[ASN][1000 genomes]
rs1053446	0.96[ASN][1000 genomes]
rs10739927	0.91[ASN][1000 genomes]
rs10761153	0.96[ASN][1000 genomes]
rs10761154	0.99[ASN][1000 genomes]
rs10761158	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10761161	0.91[ASN][1000 genomes]
rs10820964	0.89[ASN][1000 genomes]
rs10820969	0.94[ASN][1000 genomes]
rs10820971	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10992291	0.89[ASN][1000 genomes]
rs10992322	1.00[ASN][1000 genomes]
rs10992340	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992347	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1133908	0.91[ASN][1000 genomes]
rs11789163	0.95[ASN][1000 genomes]
rs11795122	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12343820	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12348488	0.86[ASN][1000 genomes]
rs12353096	0.89[ASN][1000 genomes]
rs1535754	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1924243	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1924244	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2007837	0.95[ASN][1000 genomes]
rs2025388	0.96[ASN][1000 genomes]
rs2274966	0.99[ASN][1000 genomes]
rs2296666	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2296667	0.94[ASN][1000 genomes]
rs2516567	0.99[ASN][1000 genomes]
rs2761679	0.96[ASN][1000 genomes]
rs3739606	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3780347	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4743874	0.81[ASN][1000 genomes]
rs4744133	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4744134	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4744135	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4744136	0.91[ASN][1000 genomes]
rs6479416	0.91[ASN][1000 genomes]
rs6479417	0.91[ASN][1000 genomes]
rs6479419	0.94[ASN][1000 genomes]
rs6479420	0.94[ASN][1000 genomes]
rs6479423	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7020874	0.94[ASN][1000 genomes]
rs7023004	0.96[ASN][1000 genomes]
rs7026361	0.96[ASN][1000 genomes]
rs7031567	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7045409	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7047089	0.94[ASN][1000 genomes]
rs710162	0.90[ASN][1000 genomes]
rs747629	0.81[ASN][1000 genomes]
rs7847929	1.00[ASN][1000 genomes]
rs7850432	0.96[ASN][1000 genomes]
rs7853859	1.00[ASN][1000 genomes]
rs7856204	1.00[ASN][1000 genomes]
rs7860774	0.90[ASN][1000 genomes]
rs7860786	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7863234	0.96[ASN][1000 genomes]
rs7863406	0.91[ASN][1000 genomes]
rs7864630	0.94[ASN][1000 genomes]
rs7868640	0.97[ASN][1000 genomes]
rs7869742	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7872375	0.91[ASN][1000 genomes]
rs7873932	0.91[ASN][1000 genomes]
rs8067	0.96[ASN][1000 genomes]
rs927865	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9299404	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95169400-95183800	Weak transcription	Aorta	Aorta
2	chr9:95173200-95184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:95173200-95188400	Weak transcription	Fetal Heart	heart
4	chr9:95173800-95183400	Weak transcription	Fetal Stomach	stomach
5	chr9:95173800-95183400	Weak transcription	Ovary	ovary
6	chr9:95179600-95183000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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