Variant report

Variant	rs10116241
Chromosome Location	chr9:95240546-95240547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95239945..95242364-chr9:95245740..95247306,2	MCF-7	breast:
2	chr9:95236896..95239827-chr9:95240100..95242335,3	K562	blood:
3	chr9:95238409..95241163-chr9:95245198..95246884,2	MCF-7	breast:
4	chr9:95238177..95240613-chr9:95242507..95244847,2	K562	blood:

Variant related genes	Relation type
ENSG00000106819	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10115222	0.91[CEU][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs10115290	0.97[ASN][1000 genomes]
rs10116813	0.87[CEU][hapmap]
rs10117627	0.95[ASN][1000 genomes]
rs10118939	0.87[CEU][hapmap]
rs10120329	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10121495	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10123342	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs10123738	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10429459	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10514815	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10739927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10739928	0.91[CEU][hapmap]
rs1075397	0.81[ASN][1000 genomes]
rs10761153	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761155	0.87[CEU][hapmap]
rs10761158	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs10761161	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761164	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10820964	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10820965	0.91[CEU][hapmap]
rs10820966	0.91[CEU][hapmap]
rs10820967	0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs10820968	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820980	0.87[CEU][hapmap]
rs10820986	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10820988	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10820990	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10992291	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10992303	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs10992304	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10992319	0.81[EUR][1000 genomes]
rs10992322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992340	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992349	0.87[CEU][hapmap]
rs10992393	0.83[CEU][hapmap]
rs1121978	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs1121979	0.91[CEU][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes]
rs1133908	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11789163	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792342	0.86[EUR][1000 genomes]
rs11794346	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs11795122	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12335553	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12336415	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs12338938	0.91[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12341817	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs12342019	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs12343820	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348488	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12353096	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13301537	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs1535754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.99[ASN][1000 genomes]
rs1535756	0.87[CEU][hapmap]
rs1924243	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1924244	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980848	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs2007837	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2025388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2026585	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2094281	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs2104533	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.82[ASN][1000 genomes]
rs2274966	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2296666	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs2296667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2296669	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs2516567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2516568	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2761679	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2761681	0.91[CEU][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs2895219	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap]
rs3118008	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3739606	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758229	0.91[CEU][hapmap];0.80[MEX][hapmap]
rs3780347	0.99[ASN][1000 genomes]
rs4302908	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743873	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs4743874	0.91[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4743875	0.83[CEU][hapmap]
rs4744133	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744134	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744135	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4744136	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744137	0.87[CEU][hapmap]
rs4744138	0.83[CEU][hapmap];0.80[MEX][hapmap]
rs4744139	0.81[ASN][1000 genomes]
rs4744141	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6479419	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479420	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479422	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs6479423	0.95[ASN][1000 genomes]
rs7020104	0.83[CEU][hapmap]
rs7020874	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7022562	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7023004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7026361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7027595	0.91[CEU][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs7030920	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7031567	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7033979	0.87[CEU][hapmap]
rs7037075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs7037194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs7042335	0.91[CEU][hapmap]
rs7043152	0.91[CEU][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes]
rs7045409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7045572	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs710162	0.92[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs747629	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.86[ASN][1000 genomes]
rs7847929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7848391	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs7849788	0.81[ASN][1000 genomes]
rs7850432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7850528	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7852510	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7852698	0.83[CEU][hapmap]
rs7853859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7856204	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7860774	0.92[ASN][1000 genomes]
rs7860786	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs7863234	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7863406	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7864575	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7864630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7865019	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7867909	0.80[EUR][1000 genomes]
rs7868013	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs7868640	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869521	0.83[CEU][hapmap]
rs7869742	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7872375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap]
rs7873932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs927865	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs9299404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9299405	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs968040	0.87[CEU][hapmap]
rs987554	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs10116241	ZNF484	cis	parietal	SCAN
rs10116241	OGN	cis	Nerve Tibial	GTEx
rs10116241	OGN	cis	parietal	SCAN
rs10116241	ECM2	cis	cerebellum	SCAN
rs10116241	ZNF484	cis	cerebellum	SCAN
rs10116241	CENPP	cis	parietal	SCAN
rs10116241	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs10116241	CENPP	cis	cerebellum	SCAN
rs10116241	IPPK	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95219000-95241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:95220200-95242400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:95227000-95241200	Weak transcription	Ovary	ovary
4	chr9:95227400-95240800	Weak transcription	Left Ventricle	heart
5	chr9:95227400-95240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:95230600-95242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:95230800-95243400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95231000-95241200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:95232200-95241200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:95232200-95242600	Weak transcription	K562	blood
12	chr9:95235400-95251600	Weak transcription	Psoas Muscle	Psoas
13	chr9:95236400-95241600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:95236600-95240800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:95238600-95241200	Weak transcription	Right Atrium	heart
16	chr9:95239000-95241200	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:95239600-95241200	Weak transcription	Esophagus	oesophagus
18	chr9:95239600-95242000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:95239800-95240800	Weak transcription	Aorta	Aorta
20	chr9:95240000-95241200	Weak transcription	Fetal Heart	heart
21	chr9:95240000-95243200	Weak transcription	GM12878-XiMat	blood
22	chr9:95240200-95240600	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:95240200-95241200	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:95240400-95242800	Enhancers	Fetal Stomach	stomach

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