Variant report

Variant	rs4743873
Chromosome Location	chr9:95270781-95270782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95268933..95272966-chr9:95273116..95276340,3	K562	blood:
2	chr9:95252580..95255357-chr9:95268948..95271253,2	MCF-7	breast:
3	chr9:95269994..95273497-chr9:95274133..95276340,3	K562	blood:
4	chr9:95268662..95271530-chr9:95273359..95275771,3	MCF-7	breast:

Extended variants
information (count: 169 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10114912	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10114932	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10115222	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs10115290	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10116241	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10116813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10117627	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10117680	0.81[EUR][1000 genomes]
rs10118107	0.81[EUR][1000 genomes]
rs10118939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10120980	0.84[ASN][1000 genomes]
rs10123342	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs10125450	0.82[EUR][1000 genomes]
rs10125587	0.84[AMR][1000 genomes]
rs10283572	0.86[CEU][hapmap]
rs10429459	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10453241	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10514815	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1053441	0.87[CEU][hapmap]
rs1053446	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10739928	0.92[ASN][1000 genomes]
rs10761151	0.89[ASN][1000 genomes]
rs10761154	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10761155	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10761158	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10761160	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761164	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10820960	0.89[ASN][1000 genomes]
rs10820961	0.89[ASN][1000 genomes]
rs10820965	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10820966	0.92[ASN][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs10820968	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10820969	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820971	0.87[CEU][hapmap]
rs10820980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820986	0.84[CEU][hapmap]
rs10820989	0.81[EUR][1000 genomes]
rs10820990	0.84[CEU][hapmap]
rs10820994	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821008	0.84[AMR][1000 genomes]
rs10992303	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10992304	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992319	0.89[ASN][1000 genomes]
rs10992322	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10992347	0.91[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992365	0.81[EUR][1000 genomes]
rs10992366	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992393	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs1121978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1121979	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11788523	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs11791339	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs11791805	0.85[ASN][1000 genomes]
rs11792019	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792342	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11793727	0.84[ASN][1000 genomes]
rs11794346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12336415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12336884	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12338938	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12341817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12343820	0.87[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13286566	0.81[AMR][1000 genomes]
rs13301537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs1535754	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1535756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1924243	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1924244	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1980848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2026585	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2094281	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2104533	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2236341	0.89[ASN][1000 genomes]
rs2273862	0.89[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2295941	0.89[ASN][1000 genomes]
rs2296666	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2296667	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs2296669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2516567	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2516568	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2761677	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs2761681	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2895219	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3739606	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3758229	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs3780347	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3927488	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743874	0.87[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4743875	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs4744133	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744134	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs4744135	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4744136	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4744137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744138	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744139	0.80[AMR][1000 genomes]
rs4744141	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62572543	0.88[EUR][1000 genomes]
rs6479418	0.92[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479422	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479423	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7020104	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs7020874	0.83[ASW][hapmap];0.84[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7022562	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7024190	0.89[ASN][1000 genomes]
rs7026361	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7027595	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7029939	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7030920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7031567	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7033979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap]
rs7042335	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs7043152	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7045409	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7045572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7047089	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs724102	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs747628	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs747629	0.83[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7847534	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7847929	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7848055	0.92[ASN][1000 genomes]
rs7848391	0.84[CEU][hapmap]
rs7848399	0.86[CHB][hapmap]
rs7848472	1.00[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7849927	0.81[EUR][1000 genomes]
rs7850432	0.83[ASW][hapmap];0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7850528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7852698	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs7853859	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7860786	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7864575	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7865019	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7867909	0.92[ASN][1000 genomes]
rs7868013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869521	0.95[CEU][hapmap]
rs7869742	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7872610	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7872644	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7873390	0.81[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874151	0.84[ASN][1000 genomes]
rs8067	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs927865	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9299403	0.89[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs9299405	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs968040	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs987553	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs4743873	CENPP	cis	Esophagus Muscularis	GTEx
rs4743873	ZNF484	cis	cerebellum	SCAN
rs4743873	CENPP	cis	parietal	SCAN
rs4743873	ZNF484	cis	parietal	SCAN
rs4743873	NOL8	cis	cerebellum	SCAN
rs4743873	CENPP	cis	cerebellum	SCAN
rs4743873	CENPP	cis	Muscle Skeletal	GTEx
rs4743873	RP11-19J3.3	cis	multi-tissue	Pritchard

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95255000-95274600	Weak transcription	Liver	Liver
2	chr9:95266600-95270800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:95266600-95271800	Enhancers	Fetal Muscle Leg	muscle
4	chr9:95266800-95270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:95267000-95271000	Enhancers	Fetal Stomach	stomach
6	chr9:95267200-95271400	Enhancers	Adipose Nuclei	Adipose
7	chr9:95268200-95271400	Enhancers	Fetal Lung	lung
8	chr9:95268200-95271400	Enhancers	Ovary	ovary
9	chr9:95268400-95274000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:95268600-95270800	Enhancers	NHDF-Ad	bronchial
11	chr9:95268600-95270800	Enhancers	NHLF	lung
12	chr9:95268600-95271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:95268600-95271200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:95268600-95278600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:95268800-95270800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:95269000-95270800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:95269000-95270800	Enhancers	Esophagus	oesophagus
18	chr9:95269000-95270800	Enhancers	Fetal Muscle Trunk	muscle
19	chr9:95269000-95270800	Enhancers	NH-A	brain
20	chr9:95269000-95271000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:95269000-95273000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:95269400-95270800	Enhancers	Duodenum Mucosa	Duodenum
23	chr9:95269400-95271000	Enhancers	Fetal Intestine Small	intestine
24	chr9:95269400-95274600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:95269800-95270800	Enhancers	Fetal Intestine Large	intestine
26	chr9:95269800-95270800	Enhancers	Right Atrium	heart
27	chr9:95269800-95270800	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr9:95269800-95271000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr9:95269800-95271000	Enhancers	Left Ventricle	heart
30	chr9:95269800-95274200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:95269800-95298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:95270000-95270800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:95270000-95270800	Enhancers	Brain Anterior Caudate	brain
34	chr9:95270000-95270800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr9:95270000-95271400	Weak transcription	Gastric	stomach
36	chr9:95270000-95272800	Weak transcription	Osteobl	bone
37	chr9:95270200-95273800	Weak transcription	NHEK	skin
38	chr9:95270400-95270800	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr9:95270400-95271000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:95270400-95271600	Enhancers	Rectal Smooth Muscle	rectum
41	chr9:95270400-95274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:95270400-95275400	Weak transcription	Aorta	Aorta
43	chr9:95270400-95281000	Weak transcription	Thymus	Thymus
44	chr9:95270600-95270800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr9:95270600-95270800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:95270600-95271000	Flanking Active TSS	Fetal Heart	heart
47	chr9:95270600-95271400	Weak transcription	Lung	lung
48	chr9:95270600-95274400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:95270600-95275200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:95270600-95275200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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