Variant report

Variant	rs13286566
Chromosome Location	chr9:95473178-95473179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95467325..95471055-chr9:95471061..95474660,4	K562	blood:
2	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:
3	chr9:95430895..95433656-chr9:95472746..95476771,4	MCF-7	breast:
4	chr9:95471128..95473900-chr9:95482099..95486004,3	K562	blood:
5	chr9:95428577..95430199-chr9:95472529..95474207,2	MCF-7	breast:
6	chr9:95431133..95434145-chr9:95472256..95474850,3	MCF-7	breast:
7	chr9:95471660..95473559-chr9:95474095..95476677,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10114912	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10114932	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10118939	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10122383	0.92[EUR][1000 genomes]
rs10124058	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125587	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491804	0.94[EUR][1000 genomes]
rs10761163	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10820980	0.84[AMR][1000 genomes]
rs10820994	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821008	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992349	0.82[AMR][1000 genomes]
rs10992366	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992393	0.88[EUR][1000 genomes]
rs10992424	0.94[EUR][1000 genomes]
rs10992450	0.92[EUR][1000 genomes]
rs10992457	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992471	0.87[ASN][1000 genomes]
rs11788523	0.84[AMR][1000 genomes]
rs11794346	0.82[AMR][1000 genomes]
rs12341817	0.84[AMR][1000 genomes]
rs13284106	0.87[EUR][1000 genomes]
rs13301537	0.82[AMR][1000 genomes]
rs1980848	0.84[AMR][1000 genomes]
rs2094281	0.85[AMR][1000 genomes]
rs2296669	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743873	0.81[AMR][1000 genomes]
rs4743875	0.88[EUR][1000 genomes]
rs4743876	0.94[EUR][1000 genomes]
rs4744137	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744138	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744141	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744143	0.89[EUR][1000 genomes]
rs6479431	0.93[EUR][1000 genomes]
rs7020104	0.87[EUR][1000 genomes]
rs7029939	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7033979	0.82[AMR][1000 genomes]
rs7043984	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046335	0.90[EUR][1000 genomes]
rs724102	0.86[EUR][1000 genomes]
rs747628	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs755209	0.94[EUR][1000 genomes]
rs7847534	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7848399	0.95[ASN][1000 genomes]
rs7852698	0.86[EUR][1000 genomes]
rs7861907	0.95[ASN][1000 genomes]
rs7864575	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7865019	0.85[AMR][1000 genomes]
rs7865118	0.89[EUR][1000 genomes]
rs7868013	0.84[AMR][1000 genomes]
rs7869521	0.88[EUR][1000 genomes]
rs7872610	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9299405	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs968040	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs987553	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13286566	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr9:95464800-95474600	Weak transcription	K562	blood
3	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
5	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
6	chr9:95469000-95473400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:95469000-95473400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:95469000-95477200	Weak transcription	Stomach Mucosa	stomach
9	chr9:95469200-95473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:95469200-95473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:95469200-95475600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:95469200-95477400	Weak transcription	Right Atrium	heart
13	chr9:95469200-95480400	Weak transcription	Psoas Muscle	Psoas
14	chr9:95469400-95482000	Weak transcription	Fetal Brain Male	brain
15	chr9:95470000-95473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:95470200-95476000	Weak transcription	NH-A	brain
17	chr9:95470400-95474800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:95470600-95476200	Weak transcription	Fetal Kidney	kidney
19	chr9:95470600-95481400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr9:95470800-95474200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr9:95470800-95474200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr9:95470800-95474800	Strong transcription	HSMM	muscle
23	chr9:95470800-95484800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:95471000-95473400	Strong transcription	Primary T cells from cord blood	blood
25	chr9:95471000-95473400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:95471000-95473600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:95471000-95473600	Genic enhancers	NHEK	skin
28	chr9:95471000-95485400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:95471000-95485600	Strong transcription	Fetal Thymus	thymus
30	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
31	chr9:95471200-95473400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:95471200-95473600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:95471200-95473600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:95471200-95473800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:95471200-95474200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr9:95471200-95474200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:95471200-95477000	Strong transcription	Placenta	Placenta
38	chr9:95471200-95478000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:95471200-95484200	Strong transcription	Liver	Liver
40	chr9:95471200-95485000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr9:95471200-95485200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:95471200-95485200	Strong transcription	Fetal Brain Female	brain
43	chr9:95471200-95486000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:95471400-95473400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr9:95471400-95473400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr9:95471400-95473400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:95471400-95473400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:95471400-95473800	Strong transcription	Primary B cells from cord blood	blood
49	chr9:95471400-95477000	Weak transcription	Fetal Heart	heart
50	chr9:95471400-95477000	Strong transcription	Left Ventricle	heart

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