Variant report

Variant	rs755209
Chromosome Location	chr9:95489671-95489672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95488025..95490197-chr9:95526052..95527941,3	K562	blood:
2	chr9:95489380..95491357-chr9:95508006..95509721,2	K562	blood:
3	chr9:95488503..95490523-chr9:95550611..95553154,2	MCF-7	breast:
4	chr9:95489432..95492174-chr9:95505012..95506528,2	K562	blood:
5	chr9:95487457..95489961-chr9:95493403..95495209,2	MCF-7	breast:
6	chr9:95482315..95485093-chr9:95487732..95490761,4	K562	blood:
7	chr9:95488191..95494776-chr9:95524763..95529525,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10120915	1.00[ASN][1000 genomes]
rs10121597	1.00[ASN][1000 genomes]
rs10122383	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124058	0.94[EUR][1000 genomes]
rs10125587	0.94[EUR][1000 genomes]
rs1022844	1.00[ASN][1000 genomes]
rs10491804	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821008	0.94[EUR][1000 genomes]
rs10992393	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992424	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992450	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992457	0.94[EUR][1000 genomes]
rs13284106	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13286566	0.94[EUR][1000 genomes]
rs2181585	1.00[ASN][1000 genomes]
rs2296669	0.86[EUR][1000 genomes]
rs2296671	1.00[ASN][1000 genomes]
rs41273372	1.00[ASN][1000 genomes]
rs4743875	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743876	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744143	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6479431	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020104	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7043984	0.94[EUR][1000 genomes]
rs7046335	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724102	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73520580	1.00[ASN][1000 genomes]
rs7852698	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7865118	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7869521	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv999632	chr9:95483885-95491267	Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs755209	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95471000-95493000	Strong transcription	Thymus	Thymus
2	chr9:95471800-95492400	Strong transcription	Dnd41	blood
3	chr9:95475000-95491600	Strong transcription	Primary T cells from cord blood	blood
4	chr9:95475000-95492200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:95475600-95491800	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:95475600-95492000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:95475800-95492000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95475800-95492200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:95478600-95490400	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr9:95479200-95498200	Weak transcription	Stomach Mucosa	stomach
12	chr9:95479400-95491600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr9:95479400-95492600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:95482600-95497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:95482600-95498600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:95482800-95499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:95483200-95490600	Weak transcription	Small Intestine	intestine
18	chr9:95483400-95497800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:95483800-95490200	Weak transcription	Fetal Kidney	kidney
20	chr9:95484000-95491600	Weak transcription	Fetal Heart	heart
21	chr9:95484200-95498000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:95484400-95490800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:95484600-95490400	Weak transcription	Hela-S3	cervix
24	chr9:95484600-95499400	Weak transcription	Osteobl	bone
25	chr9:95484800-95491800	Weak transcription	Fetal Brain Male	brain
26	chr9:95484800-95501800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr9:95485000-95491200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr9:95485200-95491200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr9:95485400-95489800	Weak transcription	Colonic Mucosa	Colon
30	chr9:95485400-95489800	Weak transcription	Ovary	ovary
31	chr9:95485600-95489800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:95485600-95490400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
34	chr9:95485800-95490200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr9:95485800-95491000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:95486200-95490200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr9:95486200-95490200	Genic enhancers	NHEK	skin
38	chr9:95486200-95493400	Genic enhancers	Fetal Muscle Trunk	muscle
39	chr9:95486600-95491200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:95486600-95493200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:95486800-95491200	Genic enhancers	Placenta	Placenta
42	chr9:95486800-95491800	Strong transcription	Brain Germinal Matrix	brain
43	chr9:95486800-95491800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
44	chr9:95487000-95490200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr9:95487000-95490200	Genic enhancers	Fetal Muscle Leg	muscle
46	chr9:95487000-95491000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:95487000-95491200	Strong transcription	A549	lung
48	chr9:95487000-95492400	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:95487000-95492400	Genic enhancers	Lung	lung
50	chr9:95487000-95493400	Genic enhancers	Spleen	Spleen

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