Variant report

Variant	rs1022844
Chromosome Location	chr9:95553464-95553465
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95471876..95472624-chr9:95552927..95553706,2	K562	blood:
2	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:
3	chr9:95527646..95528237-chr9:95552638..95553621,3	MCF-7	breast:
4	chr9:95468666..95469181-chr9:95552767..95553736,2	K562	blood:
5	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
6	chr9:95478553..95479822-chr9:95552363..95553622,4	MCF-7	breast:
7	chr9:95262989..95265065-chr9:95551736..95554056,2	MCF-7	breast:
8	chr9:95491449..95492380-chr9:95552807..95553737,7	MCF-7	breast:
9	chr9:95490525..95493250-chr9:95553271..95556888,4	MCF-7	breast:
10	chr9:95478352..95479462-chr9:95552797..95553644,12	MCF-7	breast:
11	chr9:95431446..95434360-chr9:95553227..95554835,2	K562	blood:
12	chr9:95490823..95492381-chr9:95552762..95553676,10	MCF-7	breast:
13	chr9:95477589..95479745-chr9:95552939..95554698,2	K562	blood:
14	chr9:95478498..95479642-chr9:95552743..95553782,10	K562	blood:
15	chr9:95525165..95529310-chr9:95549740..95553522,8	MCF-7	breast:
16	chr9:95527342..95528787-chr9:95552714..95553684,7	K562	blood:
17	chr9:95491803..95492319-chr9:95552914..95553715,2	K562	blood:
18	chr9:95396768..95397383-chr9:95553101..95553742,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10120856	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10120915	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122383	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10125587	0.92[CEU][hapmap]
rs10491804	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs10820999	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821008	0.91[CEU][hapmap]
rs10992393	0.91[CEU][hapmap]
rs10992424	1.00[ASN][1000 genomes]
rs10992450	1.00[ASN][1000 genomes]
rs13284038	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2181585	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296669	0.87[CEU][hapmap]
rs2296671	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41273372	1.00[ASN][1000 genomes]
rs4743875	0.91[CEU][hapmap];0.81[YRI][hapmap]
rs4743876	1.00[ASN][1000 genomes]
rs6479431	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7020104	0.91[CEU][hapmap]
rs7043984	0.91[CEU][hapmap]
rs7046335	1.00[ASN][1000 genomes]
rs724102	0.87[CEU][hapmap]
rs755209	1.00[ASN][1000 genomes]
rs7852698	0.91[CEU][hapmap];0.81[YRI][hapmap]
rs7869521	0.92[CEU][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1022844	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95552000-95553600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:95552800-95553600	Enhancers	Liver	Liver
4	chr9:95553000-95553600	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:95553000-95553600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr9:95553000-95553600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:95553000-95553600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:95553000-95553600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:95553000-95553600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:95553000-95553600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:95553000-95553600	Enhancers	Brain Cingulate Gyrus	brain
12	chr9:95553000-95553600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr9:95553000-95553600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:95553000-95553600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr9:95553000-95553600	Enhancers	Dnd41	blood
16	chr9:95553000-95553600	Enhancers	HMEC	breast
17	chr9:95553200-95553600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:95553200-95553600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr9:95553200-95553600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr9:95553200-95553600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:95553200-95553600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:95553200-95553800	Enhancers	Osteobl	bone
23	chr9:95553200-95556600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:95553400-95553600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:95553400-95553600	Enhancers	Brain Hippocampus Middle	brain
26	chr9:95553400-95553600	Enhancers	Brain Substantia Nigra	brain
27	chr9:95553400-95553600	Flanking Active TSS	GM12878-XiMat	blood
28	chr9:95553400-95553800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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