Variant report

Variant	rs10125587
Chromosome Location	chr9:95499882-95499883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95497607..95506128-chr9:95524589..95529183,18	MCF-7	breast:
2	chr9:95499523..95501060-chr9:95503592..95505354,2	K562	blood:
3	chr9:95499325..95502717-chr9:95506980..95509904,5	MCF-7	breast:
4	chr9:95497520..95500210-chr9:95502956..95506656,3	MCF-7	breast:
5	chr9:95498170..95500745-chr9:95500865..95503028,2	K562	blood:
6	chr9:95489709..95492274-chr9:95498684..95502250,4	MCF-7	breast:
7	chr9:95495321..95504616-chr9:95523710..95529272,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10114912	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10114932	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10118939	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10122383	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10124058	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1022844	0.92[CEU][hapmap]
rs10491804	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs10761163	0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10761164	0.81[CEU][hapmap]
rs10820994	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10821008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992366	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10992393	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs10992424	0.94[EUR][1000 genomes]
rs10992450	0.92[EUR][1000 genomes]
rs10992457	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992471	0.87[ASN][1000 genomes]
rs11788523	0.86[AMR][1000 genomes]
rs11791339	0.84[JPT][hapmap]
rs13284106	0.87[EUR][1000 genomes]
rs13286566	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026585	0.81[CEU][hapmap]
rs2094281	0.88[AMR][1000 genomes]
rs2181585	0.83[CEU][hapmap]
rs2296669	0.96[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2895219	0.83[CEU][hapmap]
rs4743873	0.84[AMR][1000 genomes]
rs4743875	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs4743876	0.94[EUR][1000 genomes]
rs4744137	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744138	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744141	0.96[CEU][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744143	0.89[EUR][1000 genomes]
rs6479431	0.93[EUR][1000 genomes]
rs7020104	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7029939	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7043984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046335	0.90[EUR][1000 genomes]
rs724102	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs747628	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs755209	0.94[EUR][1000 genomes]
rs7847534	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7848399	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7852698	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7861907	0.95[ASN][1000 genomes]
rs7864575	0.96[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7865019	0.96[CEU][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes]
rs7865118	0.89[EUR][1000 genomes]
rs7869521	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs7872610	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9299405	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs968040	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs987553	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10125587	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95484800-95501800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
3	chr9:95490000-95507400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:95490400-95501400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:95490600-95502200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:95491200-95503000	Weak transcription	Fetal Kidney	kidney
7	chr9:95491400-95501400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:95491400-95501800	Weak transcription	Liver	Liver
9	chr9:95491400-95507600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:95491600-95500000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:95491600-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:95491600-95502400	Weak transcription	Primary T cells from cord blood	blood
13	chr9:95491600-95503000	Weak transcription	Fetal Lung	lung
14	chr9:95491800-95507600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:95492200-95501000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:95492200-95503200	Weak transcription	HepG2	liver
17	chr9:95492400-95501000	Weak transcription	Fetal Brain Female	brain
18	chr9:95492600-95501000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:95493800-95500000	Weak transcription	Fetal Stomach	stomach
20	chr9:95494400-95500400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr9:95494400-95500600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:95494600-95500400	Weak transcription	Thymus	Thymus
23	chr9:95496400-95502400	Enhancers	Placenta	Placenta
24	chr9:95496600-95502400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:95496800-95501800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:95496800-95502200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:95496800-95502400	Enhancers	Primary B cells from cord blood	blood
28	chr9:95496800-95502400	Enhancers	Right Ventricle	heart
29	chr9:95496800-95502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:95496800-95506600	Enhancers	Primary B cells from peripheral blood	blood
31	chr9:95497000-95500200	Enhancers	Spleen	Spleen
32	chr9:95497000-95500600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:95497000-95501800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:95497000-95502200	Enhancers	Lung	lung
35	chr9:95497000-95502200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:95497000-95502400	Enhancers	Fetal Heart	heart
37	chr9:95497000-95502400	Enhancers	Pancreas	Pancrea
38	chr9:95497000-95502600	Enhancers	Right Atrium	heart
39	chr9:95497000-95503000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr9:95497000-95503600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:95497000-95503600	Enhancers	Left Ventricle	heart
42	chr9:95497000-95503600	Enhancers	Ovary	ovary
43	chr9:95497000-95503600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr9:95497000-95504200	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr9:95497000-95504800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:95497200-95502400	Enhancers	Adipose Nuclei	Adipose
47	chr9:95497200-95503400	Weak transcription	A549	lung
48	chr9:95497200-95503800	Enhancers	HMEC	breast
49	chr9:95497400-95503000	Enhancers	Colon Smooth Muscle	Colon
50	chr9:95497400-95503600	Enhancers	Fetal Muscle Leg	muscle

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