Variant report

Variant	rs11791339
Chromosome Location	chr9:95312271-95312272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10114912	1.00[ASN][1000 genomes]
rs10114932	1.00[ASN][1000 genomes]
rs10115222	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs10118939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10125587	0.84[JPT][hapmap]
rs10761155	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs10761163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10820980	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10821008	0.84[JPT][hapmap]
rs10992349	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10992366	1.00[ASN][1000 genomes]
rs1121978	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs1121979	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs11788511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11791001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11791805	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11792916	0.85[ASN][1000 genomes]
rs11793563	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793727	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11794346	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs12336415	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs12341817	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs12342019	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs13301537	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs1380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1535756	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1980848	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs2094281	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2296669	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs2516568	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2761678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2761681	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs4743873	1.00[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap]
rs4744137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4744138	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4744141	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs62572543	0.98[ASN][1000 genomes]
rs6479422	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs7027595	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[JPT][hapmap]
rs7029879	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7029939	0.96[ASN][1000 genomes]
rs7030920	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs7033333	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7033979	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7042335	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7043152	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs7045572	1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap]
rs747628	0.93[ASN][1000 genomes]
rs7847534	0.93[ASN][1000 genomes]
rs7848399	0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs7848472	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7850528	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs7864575	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7865019	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7868013	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs7872610	0.96[ASN][1000 genomes]
rs7873397	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7874151	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299405	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs968040	0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs987553	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95302000-95320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:95307400-95320800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95308600-95324000	Weak transcription	Fetal Intestine Small	intestine
4	chr9:95310800-95323600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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