Variant report

Variant	rs11793563
Chromosome Location	chr9:95358450-95358451
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr9:95358323-95358529	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95355167..95358650-chr9:95359849..95362107,3	K562	blood:
2	chr9:95357901..95361208-chr9:95361655..95366316,4	K562	blood:
3	chr9:95086096..95089995-chr9:95356601..95360082,3	K562	blood:

Variant related genes	Relation type
CENPP	TF binding region
ENSG00000198000	Chromatin interaction
ENSG00000188312	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10820994	0.93[ASN][1000 genomes]
rs11788511	0.87[AMR][1000 genomes]
rs11791001	0.81[AMR][1000 genomes]
rs11791339	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11791805	0.87[AMR][1000 genomes]
rs11793727	0.87[AMR][1000 genomes]
rs1380	0.81[AMR][1000 genomes]
rs2296669	0.93[ASN][1000 genomes]
rs2296670	0.93[ASN][1000 genomes]
rs2761678	0.87[AMR][1000 genomes]
rs4744141	0.94[ASN][1000 genomes]
rs7033333	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7848472	0.87[AMR][1000 genomes]
rs7865019	0.80[ASN][1000 genomes]
rs7874151	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95347800-95364000	Weak transcription	Left Ventricle	heart
3	chr9:95353000-95362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:95353200-95359400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:95353200-95360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:95354000-95358600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:95354000-95362200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:95355600-95360400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:95355600-95360400	Weak transcription	Lung	lung
10	chr9:95355600-95360400	Weak transcription	Right Atrium	heart
11	chr9:95355600-95360400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:95355600-95362000	Weak transcription	Aorta	Aorta
13	chr9:95355600-95362800	Weak transcription	Right Ventricle	heart
14	chr9:95355800-95367000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:95356000-95358800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:95356200-95362600	Weak transcription	Fetal Thymus	thymus
17	chr9:95356400-95359800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:95356400-95360200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:95356400-95360200	Weak transcription	NHDF-Ad	bronchial
20	chr9:95356400-95360600	Weak transcription	Adipose Nuclei	Adipose
21	chr9:95356400-95362000	Weak transcription	HSMMtube	muscle
22	chr9:95356400-95362400	Weak transcription	HSMM	muscle
23	chr9:95356600-95359200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:95356600-95359200	Weak transcription	Fetal Lung	lung
25	chr9:95356600-95360000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:95356600-95360400	Weak transcription	Fetal Muscle Leg	muscle
27	chr9:95356600-95360400	Weak transcription	Ovary	ovary
28	chr9:95356600-95360600	Weak transcription	Fetal Stomach	stomach
29	chr9:95356800-95360000	Weak transcription	Colon Smooth Muscle	Colon
30	chr9:95356800-95360400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:95357800-95359200	Weak transcription	Liver	Liver
32	chr9:95357800-95360000	Weak transcription	HepG2	liver
33	chr9:95358400-95361000	Enhancers	Primary monocytes fromperipheralblood	blood

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