Variant report

Variant	rs11793727
Chromosome Location	chr9:95198154-95198155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114912	0.91[ASN][1000 genomes]
rs10114932	0.91[ASN][1000 genomes]
rs10118939	0.98[ASN][1000 genomes]
rs10761160	0.84[ASN][1000 genomes]
rs10761163	0.91[ASN][1000 genomes]
rs10820980	0.85[ASN][1000 genomes]
rs10992349	0.85[ASN][1000 genomes]
rs10992366	0.91[ASN][1000 genomes]
rs11788511	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11788523	0.84[ASN][1000 genomes]
rs11791001	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11791339	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11791805	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792019	0.84[ASN][1000 genomes]
rs11792916	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11793563	0.87[AMR][1000 genomes]
rs11794346	0.84[ASN][1000 genomes]
rs12336415	0.84[ASN][1000 genomes]
rs12336884	0.81[ASN][1000 genomes]
rs12341817	0.85[ASN][1000 genomes]
rs12342019	0.84[ASN][1000 genomes]
rs13301537	0.84[ASN][1000 genomes]
rs1380	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1535756	0.84[ASN][1000 genomes]
rs1980848	0.85[ASN][1000 genomes]
rs2094281	0.98[ASN][1000 genomes]
rs2516568	0.80[ASN][1000 genomes]
rs2761677	0.80[ASN][1000 genomes]
rs2761678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2761681	0.80[ASN][1000 genomes]
rs3780345	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824424	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743873	0.84[ASN][1000 genomes]
rs4744137	0.98[ASN][1000 genomes]
rs4744138	0.98[ASN][1000 genomes]
rs62572543	0.89[ASN][1000 genomes]
rs6479422	0.84[ASN][1000 genomes]
rs7029879	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7029939	0.87[ASN][1000 genomes]
rs7033333	0.87[AMR][1000 genomes]
rs7033979	0.84[ASN][1000 genomes]
rs747628	0.98[ASN][1000 genomes]
rs7847534	0.98[ASN][1000 genomes]
rs7848472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850528	0.84[ASN][1000 genomes]
rs7864575	0.91[ASN][1000 genomes]
rs7865019	0.84[ASN][1000 genomes]
rs7868013	0.85[ASN][1000 genomes]
rs7872610	0.94[ASN][1000 genomes]
rs7873397	0.84[ASN][1000 genomes]
rs7874151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299405	0.98[ASN][1000 genomes]
rs968040	0.98[ASN][1000 genomes]
rs987553	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95186200-95202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:95196400-95201200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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