Variant report

Variant	rs12336415
Chromosome Location	chr9:95195458-95195459
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 165 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10114912	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10114932	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10115222	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10115290	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10116241	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10116813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10117627	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10118939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10120980	0.94[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.96[YRI][hapmap];0.87[ASN][1000 genomes]
rs10123342	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10125474	0.96[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs10283572	0.86[CEU][hapmap];0.82[JPT][hapmap]
rs10429459	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10453241	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10514815	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1053441	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs1053446	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10739927	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10739928	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10761147	0.95[ASN][1000 genomes]
rs10761150	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10761151	0.92[ASN][1000 genomes]
rs10761154	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10761155	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10761158	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10761160	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761164	0.88[CEU][hapmap]
rs10820960	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs10820961	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs10820964	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs10820965	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10820966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.95[ASN][1000 genomes]
rs10820968	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820969	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10820971	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs10820980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820986	0.84[CEU][hapmap]
rs10820990	0.84[CEU][hapmap]
rs10820994	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992273	0.95[ASN][1000 genomes]
rs10992280	0.95[ASN][1000 genomes]
rs10992303	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10992304	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992319	0.92[ASN][1000 genomes]
rs10992322	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10992347	0.91[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10992349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992366	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1121978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1121979	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11788523	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs11791339	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs11791805	0.82[ASN][1000 genomes]
rs11792019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792342	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11793727	0.84[ASN][1000 genomes]
rs11794346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12336884	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12338938	0.87[CEU][hapmap]
rs12341817	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12342019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343820	0.87[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13301537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap]
rs1535754	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1535756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924243	0.80[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1924244	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1980848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2026585	0.88[CEU][hapmap]
rs2094281	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2104533	0.88[ASW][hapmap];0.88[CEU][hapmap]
rs2151618	0.95[ASN][1000 genomes]
rs2236341	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs2273862	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2295941	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs2296666	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2296667	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs2296669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2516567	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2516568	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2761677	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs2761681	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2895219	0.88[ASW][hapmap];0.88[CEU][hapmap]
rs3739606	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3758229	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.95[ASN][1000 genomes]
rs3780347	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap]
rs4743873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743874	0.87[CEU][hapmap]
rs4744133	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744134	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs4744135	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4744136	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4744137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744138	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744141	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62572543	0.84[EUR][1000 genomes]
rs6479417	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs6479418	0.95[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479422	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479423	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7020874	0.83[ASW][hapmap];0.84[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7022562	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7024190	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7026361	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7027595	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7029939	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7030920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7031567	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7033979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];0.91[CEU][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap]
rs7040949	0.95[ASN][1000 genomes]
rs7042335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7043152	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7045409	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7045572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7047089	0.88[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs710162	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs724102	0.91[CEU][hapmap]
rs747628	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs747629	0.83[ASW][hapmap];0.88[CEU][hapmap]
rs7847534	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7847929	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7848055	0.95[ASN][1000 genomes]
rs7848391	0.84[CEU][hapmap]
rs7848472	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7850432	0.83[ASW][hapmap];0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7850528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853859	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7860786	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7863406	0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap]
rs7864575	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7865019	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7867909	0.95[ASN][1000 genomes]
rs7868013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869742	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7872375	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs7872610	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873932	0.88[CEU][hapmap];0.80[JPT][hapmap]
rs7874151	0.84[ASN][1000 genomes]
rs8067	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs927865	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9299403	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs9299405	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs968040	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs987553	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs12336415	CENPP	cis	cerebellum	SCAN
rs12336415	ZNF484	cis	parietal	SCAN
rs12336415	CENPP	cis	parietal	SCAN
rs12336415	CENPP	cis	Esophagus Muscularis	GTEx
rs12336415	CENPP	cis	Muscle Skeletal	GTEx
rs12336415	OMD	cis	cerebellum	SCAN
rs12336415	ZNF484	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95186200-95202200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:95194600-95195800	Enhancers	NHDF-Ad	bronchial
3	chr9:95194800-95195600	Enhancers	Fetal Stomach	stomach
4	chr9:95195000-95196400	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:95195200-95196400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:95195400-95195600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:95195400-95195600	Flanking Active TSS	Ovary	ovary

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Variant report

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