Variant report

Variant	rs7042335
Chromosome Location	chr9:95122547-95122548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95121837..95124746-chr9:95134544..95136364,2	MCF-7	breast:

Extended variants
information (count: 154 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10115222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10116241	0.91[CEU][hapmap]
rs10116813	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10118939	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10120980	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10121495	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10125474	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10283572	0.91[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs10429459	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10453241	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs10514815	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs1053441	0.92[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs1053446	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10739927	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs10739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761147	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761151	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10761153	0.88[EUR][1000 genomes]
rs10761154	0.92[CEU][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs10761155	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10761158	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs10761160	0.92[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10820960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10820961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10820964	0.92[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs10820965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820967	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820968	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10820969	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10820971	0.92[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs10820980	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs10820986	0.85[CEU][hapmap]
rs10992273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992280	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992291	0.85[EUR][1000 genomes]
rs10992303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992304	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992322	0.92[CEU][hapmap];0.80[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10992340	0.81[EUR][1000 genomes]
rs10992347	0.88[CEU][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10992349	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs1121978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1121979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1133908	0.86[EUR][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11788523	0.89[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11791339	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11792019	0.92[ASN][1000 genomes]
rs11792342	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11794346	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs12336415	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs12336884	0.87[ASN][1000 genomes]
rs12338938	0.80[CEU][hapmap]
rs12341817	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs12342019	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs12343820	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs12353096	0.85[EUR][1000 genomes]
rs13301537	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1535754	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs1535756	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs1924243	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs1980848	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs2007837	0.82[EUR][1000 genomes]
rs2025388	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2094281	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2104533	0.83[CEU][hapmap]
rs2151618	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2236341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2273862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2274966	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs2295941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2296666	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs2296667	0.92[CEU][hapmap];0.91[YRI][hapmap]
rs2516567	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes]
rs2516568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2761677	0.95[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2761679	0.82[EUR][1000 genomes]
rs2761681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2895219	0.83[CEU][hapmap]
rs3739606	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs3758229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4743873	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.89[ASN][1000 genomes]
rs4743874	0.80[CEU][hapmap]
rs4744133	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs4744134	0.92[CEU][hapmap]
rs4744135	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs4744136	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs4744137	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4744138	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs6479416	0.86[EUR][1000 genomes]
rs6479417	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs6479418	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479419	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6479420	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6479422	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7020874	0.88[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7022562	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7023004	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7024190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7026361	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs7027595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7030920	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7031567	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs7033979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7037075	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap]
rs7037194	0.87[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs7040949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045409	0.92[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs7045451	0.82[EUR][1000 genomes]
rs7045572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7047089	0.92[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs710162	0.92[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs747629	0.83[CEU][hapmap]
rs7847929	0.92[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs7848055	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7848472	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7850432	0.92[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7850528	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7853859	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs7856204	0.84[EUR][1000 genomes]
rs7860786	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs7863406	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs7864575	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7864630	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs7867909	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7868013	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs7869742	0.92[CEU][hapmap]
rs7872375	0.92[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[ASN][1000 genomes]
rs7873932	0.92[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs8067	0.92[CEU][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs927865	0.87[CEU][hapmap];0.96[YRI][hapmap]
rs9299403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9299404	0.92[CEU][hapmap];0.80[JPT][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs9299405	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs968040	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7042335	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95116800-95127600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95116800-95128600	Weak transcription	Dnd41	blood
3	chr9:95117000-95134800	Weak transcription	Ovary	ovary
4	chr9:95118000-95135000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr9:95120000-95131400	Weak transcription	Thymus	Thymus
6	chr9:95120400-95130600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:95120600-95128000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:95120600-95128600	Weak transcription	K562	blood
9	chr9:95121600-95122800	Enhancers	Fetal Stomach	stomach
10	chr9:95121800-95122600	Enhancers	Fetal Intestine Large	intestine
11	chr9:95121800-95122800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:95121800-95122800	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:95121800-95122800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:95121800-95122800	Enhancers	Colon Smooth Muscle	Colon
15	chr9:95121800-95122800	Enhancers	Fetal Heart	heart
16	chr9:95121800-95122800	Enhancers	Fetal Thymus	thymus
17	chr9:95121800-95122800	Enhancers	GM12878-XiMat	blood
18	chr9:95122000-95122800	Enhancers	Primary B cells from peripheral blood	blood
19	chr9:95122200-95122800	Enhancers	Rectal Smooth Muscle	rectum
20	chr9:95122200-95138600	Weak transcription	Aorta	Aorta
21	chr9:95122400-95122600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:95122400-95122600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:95122400-95129200	Weak transcription	Primary T cells from cord blood	blood
24	chr9:95122400-95131200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:95122400-95132200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links