Variant report

Variant	rs10992273
Chromosome Location	chr9:94973446-94973447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:94907454..94909829-chr9:94972993..94975829,2	MCF-7	breast:
2	chr9:94966366..94969198-chr9:94971038..94974978,3	MCF-7	breast:
3	chr9:94972713..94975511-chr9:94995305..94997135,2	K562	blood:
4	chr9:94972017..94974582-chr9:94993270..94995792,2	K562	blood:

Variant related genes	Relation type
ENSG00000238996	Chromatin interaction
ENSG00000236115	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10115222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116813	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10120980	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10121495	0.83[EUR][1000 genomes]
rs10123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125474	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10283572	0.91[CEU][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs10453241	0.81[EUR][1000 genomes]
rs1053441	0.92[CEU][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs1053446	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.80[EUR][1000 genomes]
rs10739927	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs10739928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761147	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10761151	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.85[EUR][1000 genomes]
rs10761154	0.92[CEU][hapmap];0.88[YRI][hapmap];0.80[EUR][1000 genomes]
rs10761155	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.95[ASN][1000 genomes]
rs10761160	0.95[ASN][1000 genomes]
rs10820960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820964	0.92[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs10820965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820967	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820968	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10820969	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs10820971	0.92[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs10992280	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992291	0.87[EUR][1000 genomes]
rs10992303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992304	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs10992319	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992322	0.92[CEU][hapmap];0.80[JPT][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes]
rs1121978	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs1121979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1133908	0.86[EUR][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs11792019	0.95[ASN][1000 genomes]
rs11792342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12336415	0.95[ASN][1000 genomes]
rs12342019	0.95[ASN][1000 genomes]
rs12353096	0.87[EUR][1000 genomes]
rs1380	1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1535756	0.95[ASN][1000 genomes]
rs2007837	0.81[EUR][1000 genomes]
rs2025388	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs2151618	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274966	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs2295941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2516567	0.81[EUR][1000 genomes]
rs2516568	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761677	0.98[ASN][1000 genomes]
rs2761678	0.82[ASN][1000 genomes]
rs2761679	0.81[EUR][1000 genomes]
rs2761681	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780345	0.80[ASN][1000 genomes]
rs3824424	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs6479416	0.86[EUR][1000 genomes]
rs6479417	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs6479418	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479419	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs6479420	0.83[EUR][1000 genomes]
rs6479422	0.95[ASN][1000 genomes]
rs7020874	0.88[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs7023004	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs7024190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026361	0.92[CEU][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7027595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029879	0.83[ASN][1000 genomes]
rs7030920	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs7040949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7042335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7043152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7045409	0.82[EUR][1000 genomes]
rs7045451	0.89[EUR][1000 genomes]
rs7045572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs7047089	0.92[CEU][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs710162	0.92[CEU][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs7847929	0.92[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs7848055	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850432	0.92[CEU][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs7850528	0.95[ASN][1000 genomes]
rs7853859	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap]
rs7856204	0.81[EUR][1000 genomes]
rs7863406	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs7867909	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872375	0.92[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs7873397	0.95[ASN][1000 genomes]
rs7873932	0.92[CEU][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs9299403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9299404	0.92[CEU][hapmap];0.80[JPT][hapmap];0.88[YRI][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992273	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94968800-94976800	Strong transcription	A549	lung
2	chr9:94969000-94975400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:94969600-94975000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:94969600-94976200	Strong transcription	NH-A	brain
5	chr9:94969600-94977000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:94969800-94975400	Strong transcription	Osteobl	bone
7	chr9:94969800-94976400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:94969800-94976800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:94970000-94976600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:94970200-94974200	Strong transcription	Left Ventricle	heart
11	chr9:94970400-94975000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:94970400-94976000	Strong transcription	Hela-S3	cervix
13	chr9:94970400-94976400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr9:94970400-94976600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:94970400-94976600	Strong transcription	Liver	Liver
16	chr9:94970400-94976600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr9:94970400-94976800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr9:94970400-94976800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:94970400-94977200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr9:94970400-94977800	Strong transcription	Primary T cells from cord blood	blood
21	chr9:94970600-94976400	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:94970600-94976400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr9:94970600-94976400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:94970600-94976400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:94970600-94976600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:94970600-94976600	Strong transcription	HMEC	breast
27	chr9:94970800-94974000	Strong transcription	Placenta	Placenta
28	chr9:94970800-94975000	Strong transcription	Psoas Muscle	Psoas
29	chr9:94970800-94975200	Strong transcription	NHDF-Ad	bronchial
30	chr9:94970800-94975400	Strong transcription	Adipose Nuclei	Adipose
31	chr9:94970800-94975400	Strong transcription	NHLF	lung
32	chr9:94970800-94976000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr9:94970800-94976000	Strong transcription	HSMMtube	muscle
34	chr9:94970800-94976200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr9:94970800-94976400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr9:94970800-94976400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:94970800-94976400	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr9:94970800-94976400	Strong transcription	Brain Substantia Nigra	brain
39	chr9:94970800-94976600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:94970800-94976600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr9:94970800-94976600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:94970800-94976600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:94970800-94976600	Strong transcription	Brain Germinal Matrix	brain
44	chr9:94970800-94976600	Strong transcription	Brain Hippocampus Middle	brain
45	chr9:94970800-94976600	Strong transcription	Fetal Thymus	thymus
46	chr9:94970800-94976600	Strong transcription	Dnd41	blood
47	chr9:94970800-94976800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr9:94970800-94976800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:94970800-94976800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:94970800-94976800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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