Variant report

Variant	rs7864630
Chromosome Location	chr9:95267560-95267561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95267270..95270140-chr9:95362878..95365869,2	MCF-7	breast:
2	chr9:95266639..95268183-chr9:95274225..95275863,2	K562	blood:
3	chr9:95265820..95267695-chr9:95271447..95273946,2	K562	blood:
4	chr9:95266941..95269572-chr9:95384488..95386280,2	MCF-7	breast:

Extended variants
information (count: 149 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10115222	0.88[ASW][hapmap];0.92[CEU][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs10115290	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10116241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116813	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10117627	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10118939	0.88[CEU][hapmap]
rs10120329	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10121495	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123342	0.88[ASW][hapmap];0.92[CEU][hapmap];0.86[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs10123738	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10283572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10429459	0.88[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10453241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10514815	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1053441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1053446	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10739927	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1075397	0.82[ASN][1000 genomes]
rs10761153	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10761154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761155	0.88[ASW][hapmap];0.88[CEU][hapmap];0.96[YRI][hapmap]
rs10761158	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10761161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10761164	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10820964	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10820967	0.83[ASW][hapmap];0.81[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs10820968	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10820969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10820971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10820980	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820986	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820988	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10820990	0.94[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992291	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10992303	0.83[ASW][hapmap];0.92[CEU][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap]
rs10992304	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs10992322	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992340	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992347	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10992349	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10992365	0.81[ASN][1000 genomes]
rs10992393	0.84[CEU][hapmap]
rs1121978	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1121979	0.88[ASW][hapmap];0.92[CEU][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs1133908	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11789163	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11792342	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11794346	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs11795122	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12335553	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12336415	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12338938	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12341817	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12342019	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs12343820	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12348488	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12353096	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13301537	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs1535754	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1535756	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs1924243	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1924244	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1980848	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2007837	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025388	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2026585	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs2094281	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs2104533	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.83[ASN][1000 genomes]
rs2274966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296666	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2296667	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296669	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs2516567	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2516568	0.91[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2761679	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2761681	0.94[ASW][hapmap];0.92[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2895219	0.81[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap]
rs3118008	0.94[ASN][1000 genomes]
rs3739606	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3758229	0.92[CEU][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs3780347	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302908	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743873	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4743874	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4743875	0.84[CEU][hapmap]
rs4744133	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4744134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744135	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744136	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744137	0.88[CEU][hapmap]
rs4744138	0.81[ASW][hapmap];0.83[CEU][hapmap];0.80[MEX][hapmap]
rs4744139	0.82[ASN][1000 genomes]
rs4744141	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs6479416	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479417	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6479419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479420	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479422	0.88[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479423	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7020104	0.84[CEU][hapmap]
rs7020874	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7022562	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs7023004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7026361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7027595	0.88[ASW][hapmap];0.92[CEU][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs7030920	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7031567	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7033979	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs7037075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7037194	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap]
rs7042335	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs7043152	0.88[ASW][hapmap];0.92[CEU][hapmap];0.83[LWK][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs7045409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7045572	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7047089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs710162	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747629	0.87[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.87[ASN][1000 genomes]
rs7847929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7848391	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap]
rs7849788	0.82[ASN][1000 genomes]
rs7850432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7850528	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7852510	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7852698	0.84[CEU][hapmap]
rs7853859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7856204	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7860774	0.91[ASN][1000 genomes]
rs7860786	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7863234	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7863406	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7864575	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7865019	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7868013	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7868640	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869521	0.83[CEU][hapmap]
rs7869742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872375	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7873397	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs7873932	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927865	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9299404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9299405	0.81[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap]
rs968040	0.81[ASW][hapmap];0.87[CEU][hapmap]
rs987554	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv1822933	chr9:95255176-95293308	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7864630	CENPP	cis	cerebellum	SCAN
rs7864630	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs7864630	ECM2	cis	cerebellum	SCAN
rs7864630	OGN	cis	Nerve Tibial	GTEx
rs7864630	CENPP	cis	parietal	SCAN
rs7864630	ZNF484	cis	cerebellum	SCAN
rs7864630	IPPK	cis	cerebellum	SCAN
rs7864630	ZNF484	cis	parietal	SCAN
rs7864630	OGN	cis	parietal	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95252600-95269400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:95255000-95274600	Weak transcription	Liver	Liver
4	chr9:95255400-95269400	Weak transcription	Right Ventricle	heart
5	chr9:95258200-95268000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:95258600-95268200	Weak transcription	Fetal Heart	heart
7	chr9:95261400-95268200	Weak transcription	Brain Substantia Nigra	brain
8	chr9:95262200-95269800	Weak transcription	Fetal Thymus	thymus
9	chr9:95262200-95270000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:95262400-95268200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:95264200-95268200	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:95264400-95268200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr9:95264600-95267800	Weak transcription	HSMMtube	muscle
14	chr9:95264600-95268200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr9:95264600-95269000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:95264600-95270000	Weak transcription	Lung	lung
17	chr9:95264800-95270000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:95266000-95268600	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:95266000-95270400	Enhancers	Colon Smooth Muscle	Colon
20	chr9:95266200-95267800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:95266200-95268000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:95266200-95268200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:95266400-95268000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:95266400-95268200	Enhancers	NHLF	lung
25	chr9:95266400-95268400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:95266400-95269400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr9:95266400-95270000	Enhancers	Osteobl	bone
28	chr9:95266600-95268000	Enhancers	HMEC	breast
29	chr9:95266600-95268200	Enhancers	NH-A	brain
30	chr9:95266600-95268200	Enhancers	NHDF-Ad	bronchial
31	chr9:95266600-95268600	Enhancers	Rectal Smooth Muscle	rectum
32	chr9:95266600-95269200	Enhancers	K562	blood
33	chr9:95266600-95270400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:95266600-95270800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:95266600-95271800	Enhancers	Fetal Muscle Leg	muscle
36	chr9:95266800-95267600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:95266800-95268200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr9:95266800-95268200	Weak transcription	Ovary	ovary
39	chr9:95266800-95269000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:95266800-95269000	Weak transcription	Esophagus	oesophagus
41	chr9:95266800-95270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:95267000-95268000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:95267000-95268200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr9:95267000-95268200	Enhancers	Hela-S3	cervix
45	chr9:95267000-95268400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:95267000-95269000	Enhancers	Aorta	Aorta
47	chr9:95267000-95269800	Weak transcription	Left Ventricle	heart
48	chr9:95267000-95270000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr9:95267000-95271000	Enhancers	Fetal Stomach	stomach
50	chr9:95267200-95268200	Weak transcription	Fetal Lung	lung

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