Variant report

Variant	rs4743875
Chromosome Location	chr9:95423674-95423675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95416446..95420766-chr9:95422078..95429343,12	MCF-7	breast:
2	chr9:95363885..95366186-chr9:95423514..95426294,2	MCF-7	breast:
3	chr9:94902419..94905300-chr9:95422249..95424033,2	MCF-7	breast:
4	chr9:95415723..95417992-chr9:95421867..95424824,2	K562	blood:

Variant related genes	Relation type
ENSG00000225511	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10114912	0.81[EUR][1000 genomes]
rs10114932	0.80[EUR][1000 genomes]
rs10116241	0.83[CEU][hapmap]
rs10118939	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs10122383	0.95[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10124058	0.88[EUR][1000 genomes]
rs10125587	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs1022844	0.91[CEU][hapmap];0.81[YRI][hapmap]
rs10429459	0.87[CEU][hapmap]
rs10491804	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10514815	0.87[CEU][hapmap]
rs10761163	0.81[EUR][1000 genomes]
rs10761164	0.84[CEU][hapmap]
rs10820980	0.95[CEU][hapmap]
rs10820986	0.80[CEU][hapmap]
rs10820990	0.80[CEU][hapmap]
rs10820994	0.85[EUR][1000 genomes]
rs10820995	0.91[LWK][hapmap];0.80[MKK][hapmap];0.80[AFR][1000 genomes]
rs10820999	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10821008	0.91[CEU][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs10992349	0.95[CEU][hapmap]
rs10992366	0.81[EUR][1000 genomes]
rs10992393	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992424	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992450	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992457	0.88[EUR][1000 genomes]
rs11794346	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs12338938	0.83[CEU][hapmap]
rs12341817	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs12343820	0.91[CEU][hapmap]
rs13284106	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13286566	0.88[EUR][1000 genomes]
rs13301537	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs1980848	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs2026585	0.84[CEU][hapmap]
rs2094281	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs2104533	0.84[CEU][hapmap]
rs2181585	0.86[CEU][hapmap]
rs2296666	0.87[CEU][hapmap]
rs2296667	0.84[CEU][hapmap]
rs2296669	0.95[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs2895219	0.84[CEU][hapmap]
rs3739606	0.87[CEU][hapmap]
rs4743873	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs4743874	0.83[CEU][hapmap]
rs4743876	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744133	0.87[CEU][hapmap]
rs4744134	0.84[CEU][hapmap]
rs4744135	0.87[CEU][hapmap]
rs4744136	0.84[CEU][hapmap]
rs4744137	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs4744138	0.91[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs4744141	0.95[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs4744143	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6479431	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7020104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7029939	0.81[EUR][1000 genomes]
rs7031567	0.87[CEU][hapmap]
rs7033979	0.95[CEU][hapmap]
rs7036459	0.91[LWK][hapmap];0.81[MKK][hapmap]
rs7043984	0.91[CEU][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs7046335	0.90[EUR][1000 genomes]
rs724102	0.95[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs747628	0.80[EUR][1000 genomes]
rs747629	0.84[CEU][hapmap]
rs755209	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7847534	0.80[EUR][1000 genomes]
rs7848391	0.80[CEU][hapmap]
rs7852698	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7860786	0.87[CEU][hapmap]
rs7864575	0.95[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs7864630	0.84[CEU][hapmap]
rs7865019	0.95[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs7865118	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7868013	0.95[CEU][hapmap];0.83[TSI][hapmap]
rs7869521	1.00[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869742	0.84[CEU][hapmap]
rs7872610	0.80[EUR][1000 genomes]
rs927865	0.87[CEU][hapmap]
rs9299405	0.95[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs968040	0.95[CEU][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs987553	0.80[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4743875	NOL8	cis	cerebellum	SCAN
rs4743875	CENPP	cis	Muscle Skeletal	GTEx
rs4743875	CENPP	cis	cerebellum	SCAN
rs4743875	CENPP	cis	parietal	SCAN
rs4743875	ZNF484	cis	parietal	SCAN
rs4743875	ZNF484	cis	cerebellum	SCAN
rs4743875	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
2	chr9:95408800-95426800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
4	chr9:95410800-95427000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:95411800-95426600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:95411800-95427400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:95412000-95423800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:95412000-95426600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:95412000-95428400	Weak transcription	K562	blood
11	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
12	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
13	chr9:95413400-95427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:95416800-95426600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr9:95417800-95426600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:95417800-95426600	Weak transcription	Right Atrium	heart
17	chr9:95417800-95431000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:95418000-95428800	Weak transcription	Fetal Lung	lung
19	chr9:95418000-95431000	Weak transcription	Psoas Muscle	Psoas
20	chr9:95418200-95428600	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:95418600-95431000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:95418800-95424800	Weak transcription	Primary B cells from cord blood	blood
23	chr9:95418800-95426800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:95420000-95426000	Weak transcription	HepG2	liver
25	chr9:95420600-95425200	Weak transcription	Liver	Liver
26	chr9:95420800-95423800	Weak transcription	HSMM	muscle
27	chr9:95420800-95424000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr9:95420800-95425000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:95420800-95425000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:95420800-95425400	Weak transcription	Primary T cells from cord blood	blood
31	chr9:95420800-95426400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr9:95420800-95426400	Weak transcription	NHLF	lung
33	chr9:95420800-95426600	Weak transcription	NHDF-Ad	bronchial
34	chr9:95420800-95427000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:95420800-95428200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr9:95420800-95428200	Weak transcription	Fetal Intestine Large	intestine
37	chr9:95420800-95428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr9:95420800-95428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:95420800-95428400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:95420800-95429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:95420800-95430800	Weak transcription	HSMMtube	muscle
42	chr9:95420800-95431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:95420800-95431000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr9:95421000-95424000	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:95421000-95424800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr9:95421000-95425200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:95421000-95425200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr9:95421000-95425400	Weak transcription	Placenta	Placenta
49	chr9:95421000-95426000	Weak transcription	Thymus	Thymus
50	chr9:95421000-95426600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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