Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95439856..95442869-chr9:95443168..95446358,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10114912	0.81[EUR][1000 genomes]
rs10122383	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10124058	0.89[EUR][1000 genomes]
rs10125587	0.89[EUR][1000 genomes]
rs10491804	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761163	0.81[EUR][1000 genomes]
rs10820994	0.84[EUR][1000 genomes]
rs10821008	0.89[EUR][1000 genomes]
rs10992366	0.81[EUR][1000 genomes]
rs10992393	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992424	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992450	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992457	0.89[EUR][1000 genomes]
rs13284106	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13286566	0.89[EUR][1000 genomes]
rs2296669	0.91[EUR][1000 genomes]
rs4743875	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743876	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744141	0.85[EUR][1000 genomes]
rs4744143	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479431	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7020104	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7029939	0.81[EUR][1000 genomes]
rs7043984	0.89[EUR][1000 genomes]
rs7046335	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs724102	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs755209	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7852698	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7869521	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv972419	chr9:95438927-95440430	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7865118	CENPP	cis	Muscle Skeletal	GTEx
rs7865118	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95433400-95442800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95433800-95441800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95433800-95444000	Weak transcription	Fetal Brain Female	brain
4	chr9:95434000-95441800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:95434000-95441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:95434000-95442400	Weak transcription	NHDF-Ad	bronchial
7	chr9:95434200-95441800	Weak transcription	Esophagus	oesophagus
8	chr9:95434200-95441800	Weak transcription	NHEK	skin
9	chr9:95434200-95442800	Weak transcription	Placenta	Placenta
10	chr9:95439000-95440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:95439600-95442200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:95439800-95441400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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