Variant report

Variant	rs7869521
Chromosome Location	chr9:95411059-95411060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95406971..95409347-chr9:95410365..95412966,3	K562	blood:
2	chr9:95408645..95411080-chr9:95427015..95428755,2	MCF-7	breast:
3	chr9:95410486..95413070-chr9:95417847..95420267,2	K562	blood:
4	chr9:95410388..95412168-chr9:95415028..95416964,2	MCF-7	breast:

Extended variants
information (count: 83 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10114912	0.81[EUR][1000 genomes]
rs10114932	0.80[EUR][1000 genomes]
rs10115976	0.81[YRI][hapmap]
rs10116241	0.83[CEU][hapmap]
rs10118939	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs10122383	0.95[CEU][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10124058	0.88[EUR][1000 genomes]
rs10125587	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1022844	0.92[CEU][hapmap];0.83[YRI][hapmap]
rs10429459	0.87[CEU][hapmap]
rs10491804	0.96[CEU][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10514815	0.87[CEU][hapmap]
rs10761163	0.81[EUR][1000 genomes]
rs10761164	0.81[CEU][hapmap]
rs10820980	0.96[CEU][hapmap]
rs10820994	0.85[EUR][1000 genomes]
rs10820999	0.80[AMR][1000 genomes]
rs10821008	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs10992347	0.88[CEU][hapmap]
rs10992349	0.96[CEU][hapmap]
rs10992366	0.81[EUR][1000 genomes]
rs10992393	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992424	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992450	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992457	0.88[EUR][1000 genomes]
rs11794346	0.95[CEU][hapmap]
rs12338938	0.80[CEU][hapmap]
rs12341817	0.95[CEU][hapmap]
rs12343820	0.92[CEU][hapmap]
rs13284106	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13286566	0.88[EUR][1000 genomes]
rs13301537	0.95[CEU][hapmap]
rs1980848	0.95[CEU][hapmap]
rs2026585	0.81[CEU][hapmap]
rs2094281	0.95[CEU][hapmap]
rs2104533	0.83[CEU][hapmap]
rs2181585	0.86[CEU][hapmap];0.85[YRI][hapmap]
rs2296666	0.87[CEU][hapmap]
rs2296667	0.83[CEU][hapmap]
rs2296669	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs2895219	0.83[CEU][hapmap]
rs3739606	0.87[CEU][hapmap]
rs4743873	0.95[CEU][hapmap]
rs4743874	0.80[CEU][hapmap]
rs4743875	1.00[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743876	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744133	0.87[CEU][hapmap]
rs4744134	0.83[CEU][hapmap]
rs4744135	0.87[CEU][hapmap]
rs4744136	0.83[CEU][hapmap]
rs4744137	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4744138	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs4744141	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4744143	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6479431	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7020104	1.00[CEU][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7022562	0.87[CEU][hapmap]
rs7029939	0.81[EUR][1000 genomes]
rs7031567	0.87[CEU][hapmap]
rs7033979	0.96[CEU][hapmap]
rs7037075	0.83[CEU][hapmap]
rs7037194	0.87[CEU][hapmap]
rs7043984	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs7046335	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs724102	0.95[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs747628	0.80[EUR][1000 genomes]
rs747629	0.83[CEU][hapmap]
rs755209	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7847534	0.80[EUR][1000 genomes]
rs7852698	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7860786	0.87[CEU][hapmap]
rs7864575	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7864630	0.83[CEU][hapmap]
rs7865019	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs7865118	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7868013	0.95[CEU][hapmap]
rs7869742	0.83[CEU][hapmap]
rs7872610	0.80[EUR][1000 genomes]
rs8067	0.83[CEU][hapmap]
rs927865	0.87[CEU][hapmap]
rs9299405	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs968040	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs987553	0.80[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7869521	CENPP	cis	Esophagus Muscularis	GTEx
rs7869521	CENPP	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
3	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:95390200-95411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:95392000-95414600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr9:95392000-95419600	Strong transcription	Primary T cells from cord blood	blood
8	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr9:95393200-95412000	Strong transcription	Right Ventricle	heart
10	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:95393600-95421000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr9:95393800-95412800	Strong transcription	Placenta	Placenta
14	chr9:95393800-95413400	Strong transcription	Dnd41	blood
15	chr9:95393800-95414000	Strong transcription	Fetal Thymus	thymus
16	chr9:95393800-95414000	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr9:95393800-95414400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr9:95393800-95419200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:95393800-95421000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:95394000-95420800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr9:95394200-95418800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:95394200-95419200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:95395000-95416600	Strong transcription	GM12878-XiMat	blood
24	chr9:95396000-95420000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:95396800-95422400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:95397200-95412800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:95397200-95417800	Strong transcription	Liver	Liver
28	chr9:95397400-95412000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:95397400-95412000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:95397400-95417000	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr9:95397600-95412000	Strong transcription	Adipose Nuclei	Adipose
32	chr9:95397600-95412800	Weak transcription	Fetal Heart	heart
33	chr9:95398200-95420800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr9:95399000-95414000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:95400400-95415600	Strong transcription	HUVEC	blood vessel
36	chr9:95400600-95414000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr9:95400600-95417600	Weak transcription	Psoas Muscle	Psoas
38	chr9:95401200-95421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:95401200-95422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:95401400-95417200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:95402800-95412800	Strong transcription	Osteobl	bone
42	chr9:95403000-95412200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr9:95403400-95412000	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr9:95403600-95412000	Strong transcription	K562	blood
45	chr9:95403800-95411200	Weak transcription	Small Intestine	intestine
46	chr9:95404200-95411800	Strong transcription	HSMM	muscle
47	chr9:95404200-95417200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95404400-95411400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:95404800-95415400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr9:95405000-95411800	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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