Variant report

Variant	rs10992424
Chromosome Location	chr9:95458537-95458538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10120915	1.00[ASN][1000 genomes]
rs10121597	1.00[ASN][1000 genomes]
rs10122383	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124058	0.94[EUR][1000 genomes]
rs10125587	0.94[EUR][1000 genomes]
rs1022844	1.00[ASN][1000 genomes]
rs10491804	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821008	0.94[EUR][1000 genomes]
rs10992393	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10992450	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992457	0.94[EUR][1000 genomes]
rs13284106	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13286566	0.94[EUR][1000 genomes]
rs2181585	1.00[ASN][1000 genomes]
rs2296669	0.86[EUR][1000 genomes]
rs2296671	1.00[ASN][1000 genomes]
rs41273372	1.00[ASN][1000 genomes]
rs4743875	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743876	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744143	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6479431	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020104	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7043984	0.94[EUR][1000 genomes]
rs7046335	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724102	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73520580	1.00[ASN][1000 genomes]
rs755209	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852698	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7865118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7869521	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10992424	CENPP	cis	Muscle Skeletal	GTEx
rs10992424	CENPP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95458400-95466400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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