Variant report

Variant	rs10120915
Chromosome Location	chr9:95547725-95547726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95540552..95544510-chr9:95545450..95549411,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10120856	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10121597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122383	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125587	0.91[CEU][hapmap]
rs1022844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491804	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10820999	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821008	0.91[CEU][hapmap]
rs10992393	0.91[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap]
rs10992424	1.00[ASN][1000 genomes]
rs10992450	1.00[ASN][1000 genomes]
rs13284038	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2181585	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296669	0.87[CEU][hapmap]
rs2296671	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41273372	1.00[ASN][1000 genomes]
rs4743875	0.91[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap]
rs4743876	1.00[ASN][1000 genomes]
rs4744141	0.87[CEU][hapmap]
rs6479431	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020104	0.91[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap]
rs7043984	0.91[CEU][hapmap]
rs7046335	1.00[ASN][1000 genomes]
rs724102	0.87[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.81[YRI][hapmap]
rs755209	1.00[ASN][1000 genomes]
rs7852698	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];0.91[MEX][hapmap];0.89[YRI][hapmap]
rs7869521	0.91[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10120915	CDK20	cis	parietal	SCAN
rs10120915	IARS	cis	parietal	SCAN
rs10120915	CENPP	cis	cerebellum	SCAN
rs10120915	NOL8	Cis_1M	lymphoblastoid	RTeQTL
rs10120915	ZNF484	cis	parietal	SCAN
rs10120915	CENPP	cis	parietal	SCAN
rs10120915	ZNF484	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95546000-95553000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95546000-95553000	Weak transcription	NHEK	skin

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