Variant report

Variant	rs73520580
Chromosome Location	chr9:95247810-95247811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95245372..95247917-chr9:95248004..95249887,2	MCF-7	breast:
2	chr9:95245180..95247895-chr9:95248279..95250997,3	K562	blood:
3	chr9:95246044..95249991-chr9:95252570..95256486,5	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10491804	1.00[ASN][1000 genomes]
rs10992424	1.00[ASN][1000 genomes]
rs2070053	1.00[EUR][1000 genomes]
rs2296671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273372	1.00[ASN][1000 genomes]
rs73520582	0.86[AFR][1000 genomes]
rs755209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95235400-95251600	Weak transcription	Psoas Muscle	Psoas
3	chr9:95241400-95251800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:95241400-95255000	Weak transcription	Esophagus	oesophagus
5	chr9:95243000-95248200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:95243600-95251200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:95243600-95263800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr9:95243800-95248400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:95243800-95248400	Weak transcription	K562	blood
10	chr9:95243800-95251200	Weak transcription	HSMM	muscle
11	chr9:95243800-95251200	Weak transcription	HSMMtube	muscle
12	chr9:95243800-95251400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:95243800-95251400	Weak transcription	Aorta	Aorta
14	chr9:95246200-95248400	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:95246200-95252000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr9:95246200-95261200	Weak transcription	Right Atrium	heart
17	chr9:95246400-95250800	Weak transcription	Adipose Nuclei	Adipose
18	chr9:95246400-95251400	Weak transcription	HMEC	breast
19	chr9:95246400-95267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:95246600-95251400	Weak transcription	NHEK	skin
21	chr9:95246800-95250200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:95246800-95250200	Weak transcription	Fetal Lung	lung
23	chr9:95246800-95250600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:95246800-95250800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:95246800-95251200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:95246800-95251200	Weak transcription	NH-A	brain
27	chr9:95246800-95251400	Weak transcription	Osteobl	bone
28	chr9:95247000-95251200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:95247000-95251400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:95247200-95248600	Weak transcription	HUVEC	blood vessel
31	chr9:95247200-95250600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:95247200-95251000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:95247200-95251200	Weak transcription	NHDF-Ad	bronchial
34	chr9:95247200-95251200	Weak transcription	NHLF	lung
35	chr9:95247200-95251400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:95247200-95252000	Weak transcription	Lung	lung
37	chr9:95247400-95248200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:95247400-95249400	Weak transcription	Fetal Stomach	stomach
39	chr9:95247400-95250000	Weak transcription	Ovary	ovary
40	chr9:95247400-95251200	Weak transcription	Fetal Heart	heart
41	chr9:95247400-95251400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:95247400-95251800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr9:95247800-95248800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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