Variant report

Variant	rs73520582
Chromosome Location	chr9:95254829-95254830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95227770..95231627-chr9:95254593..95257141,3	MCF-7	breast:
2	chr9:95252580..95255357-chr9:95268948..95271253,2	MCF-7	breast:
3	chr9:95246044..95249991-chr9:95252570..95256486,5	MCF-7	breast:
4	chr9:95086739..95088685-chr9:95254040..95256410,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198000	Chromatin interaction
ENSG00000188312	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58682047	0.88[AFR][1000 genomes]
rs73520549	0.88[AFR][1000 genomes]
rs73520580	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95241400-95255000	Weak transcription	Esophagus	oesophagus
3	chr9:95243600-95263800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:95246200-95261200	Weak transcription	Right Atrium	heart
5	chr9:95246400-95267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:95249400-95256800	Enhancers	Fetal Stomach	stomach
7	chr9:95250200-95256200	Enhancers	Fetal Lung	lung
8	chr9:95250400-95255000	Weak transcription	Ovary	ovary
9	chr9:95252200-95255000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:95252200-95255000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:95252200-95256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:95252200-95256200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:95252200-95256600	Weak transcription	Psoas Muscle	Psoas
14	chr9:95252200-95258000	Weak transcription	NHDF-Ad	bronchial
15	chr9:95252200-95258400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:95252200-95263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:95252200-95266400	Weak transcription	NHLF	lung
18	chr9:95252400-95255000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:95252400-95258600	Weak transcription	HSMM	muscle
20	chr9:95252400-95261200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:95252400-95266200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:95252600-95255000	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:95252600-95255000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:95252600-95269400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:95253000-95255000	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:95253800-95255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:95253800-95255000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr9:95254000-95255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:95254000-95256600	Enhancers	Rectal Smooth Muscle	rectum
30	chr9:95254400-95255400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:95254600-95255200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:95254600-95256400	Enhancers	Fetal Intestine Small	intestine
33	chr9:95254800-95255200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr9:95254800-95255200	Strong transcription	Aorta	Aorta
35	chr9:95254800-95255200	Weak transcription	Right Ventricle	heart
36	chr9:95254800-95255400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:95254800-95255400	Enhancers	K562	blood
38	chr9:95254800-95255600	Enhancers	Fetal Heart	heart
39	chr9:95254800-95258000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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