Variant report

Variant	rs58682047
Chromosome Location	chr9:95227525-95227526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95056040..95058266-chr9:95225229..95227656,2	K562	blood:
2	chr9:95225938..95227889-chr9:95230551..95232257,2	K562	blood:
3	chr9:95223386..95225754-chr9:95227132..95229886,2	K562	blood:
4	chr9:95227131..95229911-chr9:95235487..95238309,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7032623	0.83[AFR][1000 genomes]
rs73520549	1.00[AFR][1000 genomes]
rs73520582	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95219000-95241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:95220200-95229400	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:95220200-95242400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:95225400-95227600	Enhancers	Fetal Heart	heart
5	chr9:95225400-95227600	Enhancers	Rectal Smooth Muscle	rectum
6	chr9:95225400-95227600	Genic enhancers	Stomach Smooth Muscle	stomach
7	chr9:95225600-95235400	Weak transcription	Pancreas	Pancrea
8	chr9:95225800-95227600	Enhancers	Colon Smooth Muscle	Colon
9	chr9:95226400-95227600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:95226600-95228800	Weak transcription	Hela-S3	cervix
11	chr9:95226800-95229400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:95226800-95229400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:95226800-95229400	Weak transcription	Placenta	Placenta
14	chr9:95226800-95229400	Weak transcription	NHEK	skin
15	chr9:95226800-95231600	Weak transcription	Gastric	stomach
16	chr9:95227000-95229200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:95227000-95229400	Weak transcription	Osteobl	bone
18	chr9:95227000-95230000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:95227000-95230200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:95227000-95230400	Weak transcription	Brain Anterior Caudate	brain
21	chr9:95227000-95230400	Weak transcription	Fetal Stomach	stomach
22	chr9:95227000-95235200	Weak transcription	Aorta	Aorta
23	chr9:95227000-95241200	Weak transcription	Ovary	ovary
24	chr9:95227200-95229200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:95227200-95229400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:95227400-95229400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:95227400-95229400	Weak transcription	NHDF-Ad	bronchial
28	chr9:95227400-95230400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:95227400-95235200	Weak transcription	Psoas Muscle	Psoas
30	chr9:95227400-95240800	Weak transcription	Left Ventricle	heart
31	chr9:95227400-95240800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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