Variant report

Variant	rs7032623
Chromosome Location	chr9:95171150-95171151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:240321650..240323210-chr9:95170170..95172647,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068024	Chromatin interaction
ENSG00000222020	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58682047	0.83[AFR][1000 genomes]
rs7046109	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs73516583	0.83[AFR][1000 genomes]
rs73518478	0.83[AFR][1000 genomes]
rs73520549	0.83[AFR][1000 genomes]
rs7847918	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95167000-95172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:95167200-95172600	Weak transcription	Osteobl	bone
3	chr9:95168200-95171200	Enhancers	Fetal Muscle Leg	muscle
4	chr9:95168200-95171400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:95168400-95172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:95169000-95172600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:95169000-95172600	Weak transcription	Ovary	ovary
8	chr9:95169000-95172600	Weak transcription	Right Atrium	heart
9	chr9:95169000-95173000	Weak transcription	Fetal Kidney	kidney
10	chr9:95169000-95173600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:95169200-95172000	Weak transcription	NHLF	lung
12	chr9:95169200-95172400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:95169200-95172600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:95169200-95172600	Weak transcription	NHDF-Ad	bronchial
15	chr9:95169200-95173600	Weak transcription	K562	blood
16	chr9:95169400-95172600	Weak transcription	Fetal Heart	heart
17	chr9:95169400-95172600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:95169400-95172800	Weak transcription	GM12878-XiMat	blood
19	chr9:95169400-95183800	Weak transcription	Aorta	Aorta
20	chr9:95169600-95172400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:95169600-95172600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:95169800-95172200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:95169800-95172400	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:95169800-95175600	Weak transcription	Dnd41	blood
25	chr9:95169800-95176400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:95170000-95177600	Weak transcription	Thymus	Thymus
27	chr9:95170200-95172600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr9:95170400-95172200	Weak transcription	Fetal Stomach	stomach
29	chr9:95171000-95171600	Enhancers	Fetal Lung	lung

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