Variant report

Variant	rs12341817
Chromosome Location	chr9:95252152-95252153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95251258..95252874-chr9:95431585..95433940,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 174 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs10114912	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10114932	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10115222	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs10115290	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10116241	0.87[CEU][hapmap];0.80[MEX][hapmap]
rs10116813	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10117627	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10117680	0.81[EUR][1000 genomes]
rs10118107	0.81[EUR][1000 genomes]
rs10118939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10120980	0.86[ASN][1000 genomes]
rs10123342	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs10125450	0.82[EUR][1000 genomes]
rs10125474	0.93[ASN][1000 genomes]
rs10283572	0.86[CEU][hapmap]
rs10429459	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10453241	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10514815	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1053441	0.87[CEU][hapmap]
rs1053446	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10739928	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs10761150	0.93[ASN][1000 genomes]
rs10761151	0.90[ASN][1000 genomes]
rs10761154	0.87[CEU][hapmap];0.91[YRI][hapmap]
rs10761155	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10761158	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10761160	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761163	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10761164	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10820960	0.90[ASN][1000 genomes]
rs10820961	0.90[ASN][1000 genomes]
rs10820965	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10820966	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs10820967	0.88[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];0.93[ASN][1000 genomes]
rs10820968	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10820969	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10820971	0.87[CEU][hapmap]
rs10820980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820986	0.84[CEU][hapmap]
rs10820989	0.81[EUR][1000 genomes]
rs10820990	0.84[CEU][hapmap]
rs10820994	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821008	0.86[AMR][1000 genomes]
rs10992303	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs10992304	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10992319	0.90[ASN][1000 genomes]
rs10992322	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs10992347	0.91[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992365	0.81[EUR][1000 genomes]
rs10992366	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10992393	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs1121978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1121979	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11788511	1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11788523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11791001	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs11791339	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs11791805	0.83[ASN][1000 genomes]
rs11792019	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11792342	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11792916	1.00[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11793727	0.85[ASN][1000 genomes]
rs11794346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12336415	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12336884	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12338938	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs12342019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12343820	0.87[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13286566	0.84[AMR][1000 genomes]
rs13301537	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1380	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1535754	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1535756	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1924243	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1924244	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1980848	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025388	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2026585	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2094281	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2104533	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.82[EUR][1000 genomes]
rs2236341	0.90[ASN][1000 genomes]
rs2273862	0.90[ASN][1000 genomes]
rs2274966	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2295941	0.90[ASN][1000 genomes]
rs2296666	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2296667	0.88[CEU][hapmap];0.87[YRI][hapmap]
rs2296669	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2516567	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs2516568	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2761677	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2761678	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2761681	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2895219	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.82[EUR][1000 genomes]
rs3739606	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3758229	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs3780347	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3927488	0.82[EUR][1000 genomes]
rs4743873	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743874	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs4743875	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs4744133	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744134	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs4744135	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744136	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs4744137	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744138	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4744141	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62572543	0.88[EUR][1000 genomes]
rs6479417	0.88[CEU][hapmap]
rs6479418	0.93[ASN][1000 genomes]
rs6479419	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs6479422	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6479423	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7020104	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs7020874	0.83[ASW][hapmap];0.84[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7022562	0.94[ASW][hapmap];0.91[CEU][hapmap];0.95[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap]
rs7023004	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7024190	0.90[ASN][1000 genomes]
rs7026361	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7027595	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.93[ASN][1000 genomes]
rs7029879	0.80[ASN][1000 genomes]
rs7029939	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7030920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7031567	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7033979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7037075	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7037194	0.94[ASW][hapmap];0.91[CEU][hapmap];0.97[LWK][hapmap];0.80[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap]
rs7042335	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[ASN][1000 genomes]
rs7043152	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7045409	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7045572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7047089	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs710162	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs724102	0.91[CEU][hapmap];0.80[TSI][hapmap]
rs747628	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs747629	0.83[ASW][hapmap];0.88[CEU][hapmap];0.81[MKK][hapmap];0.82[EUR][1000 genomes]
rs7847534	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7847929	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7848055	0.93[ASN][1000 genomes]
rs7848391	0.84[CEU][hapmap]
rs7848472	1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7849927	0.81[EUR][1000 genomes]
rs7850432	0.83[ASW][hapmap];0.87[CEU][hapmap];0.91[YRI][hapmap]
rs7850528	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7852698	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs7853859	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7860786	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863406	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7864575	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7864630	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs7865019	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7867909	0.93[ASN][1000 genomes]
rs7868013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869521	0.95[CEU][hapmap]
rs7869742	0.88[CEU][hapmap];0.80[MEX][hapmap]
rs7872375	0.88[CEU][hapmap]
rs7872610	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7872644	0.82[EUR][1000 genomes]
rs7873390	0.81[EUR][1000 genomes]
rs7873397	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7873932	0.88[CEU][hapmap]
rs7874151	0.85[ASN][1000 genomes]
rs8067	0.83[ASW][hapmap];0.88[CEU][hapmap];0.91[YRI][hapmap]
rs927865	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9299403	0.90[ASN][1000 genomes]
rs9299404	0.83[ASW][hapmap];0.88[CEU][hapmap];0.80[MEX][hapmap];0.91[YRI][hapmap]
rs9299405	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs968040	0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs987553	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs12341817	CENPP	cis	Esophagus Muscularis	GTEx
rs12341817	NOL8	cis	cerebellum	SCAN
rs12341817	ZNF484	cis	cerebellum	SCAN
rs12341817	CENPP	cis	parietal	SCAN
rs12341817	CENPP	cis	cerebellum	SCAN
rs12341817	CENPP	cis	Muscle Skeletal	GTEx
rs12341817	ZNF484	cis	parietal	SCAN

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:95241400-95255000	Weak transcription	Esophagus	oesophagus
3	chr9:95243600-95263800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:95246200-95261200	Weak transcription	Right Atrium	heart
5	chr9:95246400-95267000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:95248200-95252600	Enhancers	Stomach Smooth Muscle	stomach
7	chr9:95248800-95253800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:95249000-95253600	Weak transcription	K562	blood
9	chr9:95249400-95256800	Enhancers	Fetal Stomach	stomach
10	chr9:95250200-95254800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:95250200-95256200	Enhancers	Fetal Lung	lung
12	chr9:95250400-95255000	Weak transcription	Ovary	ovary
13	chr9:95250600-95252200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:95250600-95252800	Enhancers	Rectal Smooth Muscle	rectum
15	chr9:95250800-95252200	Enhancers	Adipose Nuclei	Adipose
16	chr9:95251000-95252200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:95251200-95252200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:95251200-95252200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:95251200-95252200	Enhancers	HSMMtube	muscle
20	chr9:95251200-95252200	Enhancers	NH-A	brain
21	chr9:95251200-95252200	Enhancers	NHDF-Ad	bronchial
22	chr9:95251200-95252200	Enhancers	NHLF	lung
23	chr9:95251200-95252400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:95251200-95252400	Enhancers	HSMM	muscle
25	chr9:95251400-95252200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:95251400-95252200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:95251400-95252200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:95251400-95252200	Enhancers	HMEC	breast
29	chr9:95251400-95252200	Enhancers	NHEK	skin
30	chr9:95251400-95252600	Enhancers	Aorta	Aorta
31	chr9:95251400-95252600	Enhancers	Fetal Muscle Leg	muscle
32	chr9:95251400-95253600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:95251600-95252200	Enhancers	Psoas Muscle	Psoas
34	chr9:95251600-95252400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr9:95251800-95252200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:95251800-95252200	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr9:95251800-95254800	Weak transcription	Fetal Heart	heart
38	chr9:95252000-95252200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:95252000-95252400	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:95252000-95252400	Enhancers	Fetal Muscle Trunk	muscle
41	chr9:95252000-95252600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr9:95252000-95252600	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr9:95252000-95252600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:95252000-95252600	Enhancers	HUVEC	blood vessel

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