Variant report

Variant	rs10123738
Chromosome Location	chr9:95295479-95295480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95289634..95294322-chr9:95294432..95297818,7	K562	blood:

Variant related genes	Relation type
ENSG00000264158	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10115290	0.81[ASN][1000 genomes]
rs10116241	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10117680	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10118107	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10120329	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121495	0.80[AMR][1000 genomes]
rs10125450	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10283572	0.82[AMR][1000 genomes]
rs10429459	0.85[ASN][1000 genomes]
rs10453241	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10514815	0.85[ASN][1000 genomes]
rs1053441	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1053446	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1075397	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10761153	0.82[AMR][1000 genomes]
rs10761154	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761158	0.82[ASN][1000 genomes]
rs10761161	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761164	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10820969	0.80[AMR][1000 genomes]
rs10820971	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10820986	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820988	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820989	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10820990	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992322	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10992340	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10992347	0.82[ASN][1000 genomes]
rs10992365	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10992375	0.81[ASN][1000 genomes]
rs11789163	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11795122	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12335553	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338938	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12343820	0.83[ASN][1000 genomes]
rs13301492	0.93[ASN][1000 genomes]
rs13301652	0.93[ASN][1000 genomes]
rs1535754	0.82[ASN][1000 genomes]
rs1924243	0.82[ASN][1000 genomes]
rs2007837	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2025388	0.82[AMR][1000 genomes]
rs2026585	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2104533	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2274966	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2296666	0.80[ASN][1000 genomes]
rs2296667	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2516567	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2761679	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2895219	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3739606	0.83[ASN][1000 genomes]
rs3780347	0.85[ASN][1000 genomes]
rs3927488	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4302908	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743874	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4744133	0.82[ASN][1000 genomes]
rs4744134	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4744136	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4744139	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6479419	0.81[AMR][1000 genomes]
rs6479420	0.81[AMR][1000 genomes]
rs6479423	0.80[ASN][1000 genomes]
rs7020874	0.81[AMR][1000 genomes]
rs7023004	0.81[AMR][1000 genomes]
rs7026361	0.85[AMR][1000 genomes]
rs7045409	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7047089	0.81[AMR][1000 genomes]
rs747629	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7847929	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7849788	0.97[ASN][1000 genomes]
rs7849927	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7850432	0.82[AMR][1000 genomes]
rs7852510	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7853859	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7856204	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7863049	0.93[ASN][1000 genomes]
rs7863234	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7864630	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7868640	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7869742	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7872644	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7873390	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8067	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs927865	0.80[ASN][1000 genomes]
rs9299404	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs987554	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10123738	OGN	cis	Nerve Tibial	GTEx
rs10123738	NOL8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95269800-95298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:95276000-95296600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:95280800-95296400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:95281400-95295800	Weak transcription	Liver	Liver
5	chr9:95284000-95296400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:95287000-95296600	Weak transcription	Ovary	ovary
7	chr9:95290800-95295800	Weak transcription	Aorta	Aorta
8	chr9:95293200-95296400	Weak transcription	Adipose Nuclei	Adipose
9	chr9:95294000-95297000	Weak transcription	Left Ventricle	heart
10	chr9:95294200-95296400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:95294800-95296600	Weak transcription	Brain Hippocampus Middle	brain
12	chr9:95294800-95296600	Weak transcription	Fetal Lung	lung
13	chr9:95294800-95301200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:95295200-95297000	Weak transcription	Psoas Muscle	Psoas

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