Variant report

Variant	rs7861907
Chromosome Location	chr9:95534025-95534026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95430418..95433752-chr9:95532956..95535210,3	MCF-7	breast:
2	chr9:95532566..95534480-chr9:95535486..95538375,2	MCF-7	breast:
3	chr9:95533275..95536174-chr9:95541211..95543902,2	MCF-7	breast:
4	chr9:95524574..95529988-chr9:95531032..95538459,18	K562	blood:
5	chr9:95481964..95484058-chr9:95531811..95534209,2	MCF-7	breast:
6	chr9:95430857..95432661-chr9:95532674..95534827,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10124058	0.95[ASN][1000 genomes]
rs10125587	0.95[ASN][1000 genomes]
rs10821008	0.92[ASN][1000 genomes]
rs10992457	0.95[ASN][1000 genomes]
rs10992471	0.81[ASN][1000 genomes]
rs13286566	0.95[ASN][1000 genomes]
rs7033333	0.83[AFR][1000 genomes]
rs7043984	0.95[ASN][1000 genomes]
rs7848399	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95528800-95536400	Weak transcription	HSMM	muscle
2	chr9:95530800-95534600	Enhancers	Fetal Intestine Large	intestine
3	chr9:95530800-95534800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:95532000-95534400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr9:95532200-95534400	Enhancers	HMEC	breast
6	chr9:95532400-95534400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr9:95532400-95534400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:95532800-95534800	Enhancers	NHEK	skin
9	chr9:95533000-95535000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:95533000-95536600	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:95533200-95535000	Enhancers	Fetal Heart	heart
12	chr9:95533200-95536000	Weak transcription	Right Atrium	heart
13	chr9:95533200-95536200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:95533200-95536400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:95533200-95536400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:95533200-95536400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:95533200-95536600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:95533200-95537600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:95533200-95541200	Weak transcription	Left Ventricle	heart
20	chr9:95533400-95534400	Weak transcription	HepG2	liver
21	chr9:95533400-95536600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:95533400-95541200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:95533400-95543200	Weak transcription	Esophagus	oesophagus
24	chr9:95533600-95534800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:95533600-95536400	Weak transcription	Primary B cells from cord blood	blood
26	chr9:95533600-95537800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:95533800-95536600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr9:95533800-95537400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:95533800-95537800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:95534000-95537600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr9:95534000-95537800	Weak transcription	Primary hematopoietic stem cells	blood

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