Variant report

Variant	rs1329798
Chromosome Location	chr8:132050607-132050608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10097729	0.85[EUR][1000 genomes]
rs10109398	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1023095	0.85[EUR][1000 genomes]
rs1028945	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956570	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956571	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11989347	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997256	0.86[EUR][1000 genomes]
rs12549392	0.85[EUR][1000 genomes]
rs12674631	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12678691	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13258076	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13265695	0.83[EUR][1000 genomes]
rs1329797	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329803	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1329804	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1411179	0.85[EUR][1000 genomes]
rs1411180	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411182	0.85[EUR][1000 genomes]
rs1411186	0.85[EUR][1000 genomes]
rs1411187	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1590868	0.85[EUR][1000 genomes]
rs1590869	0.84[EUR][1000 genomes]
rs1888082	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210061	0.85[EUR][1000 genomes]
rs28508149	0.85[EUR][1000 genomes]
rs4376482	0.83[EUR][1000 genomes]
rs4388440	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389912	0.86[EUR][1000 genomes]
rs4392877	0.85[EUR][1000 genomes]
rs4403388	0.86[EUR][1000 genomes]
rs4407864	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4736731	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4736734	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4736735	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470877	0.85[EUR][1000 genomes]
rs6470878	0.85[EUR][1000 genomes]
rs6470882	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470883	0.86[EUR][1000 genomes]
rs6983987	0.85[EUR][1000 genomes]
rs6984356	0.85[EUR][1000 genomes]
rs7004104	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7007726	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826283	0.81[EUR][1000 genomes]
rs7832434	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7835943	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840086	0.86[EUR][1000 genomes]
rs7841164	0.86[EUR][1000 genomes]
rs884102	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs913819	0.84[EUR][1000 genomes]
rs928137	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928138	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932904	0.86[EUR][1000 genomes]
rs959204	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891449	chr8:132011279-132128690	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:132040200-132051000	Weak transcription	Brain Substantia Nigra	brain
2	chr8:132045400-132051000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:132049000-132051200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr8:132049200-132051000	Active TSS	Brain Cingulate Gyrus	brain
5	chr8:132049600-132051200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
6	chr8:132049800-132051000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:132049800-132051200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:132049800-132051600	Bivalent/Poised TSS	Fetal Brain Female	brain
9	chr8:132050200-132051000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
10	chr8:132050200-132051000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:132050200-132051400	Active TSS	Brain Angular Gyrus	brain
12	chr8:132050200-132052200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
13	chr8:132050200-132055600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
14	chr8:132050400-132051400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr8:132050600-132055200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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