Variant report

Variant	rs1329803
Chromosome Location	chr8:132002576-132002577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10109398	0.84[EUR][1000 genomes]
rs1028945	0.84[EUR][1000 genomes]
rs10956570	0.84[EUR][1000 genomes]
rs11989347	0.84[EUR][1000 genomes]
rs12674631	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12678691	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13258076	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1329797	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1329798	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1329804	0.87[EUR][1000 genomes]
rs1411178	0.83[JPT][hapmap]
rs1411180	0.85[EUR][1000 genomes]
rs1411187	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1556163	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1888082	0.84[EUR][1000 genomes]
rs2149888	0.88[ASN][1000 genomes]
rs3750889	0.92[ASN][1000 genomes]
rs4388440	0.84[EUR][1000 genomes]
rs4407864	0.84[EUR][1000 genomes]
rs4736731	0.84[EUR][1000 genomes]
rs4736734	0.84[EUR][1000 genomes]
rs4736735	0.84[EUR][1000 genomes]
rs6415528	0.87[ASN][1000 genomes]
rs6470879	0.82[ASN][1000 genomes]
rs6470882	0.84[EUR][1000 genomes]
rs6988204	0.83[JPT][hapmap];0.81[TSI][hapmap]
rs7007726	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7826283	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7832434	0.84[EUR][1000 genomes]
rs7835943	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs884102	0.83[EUR][1000 genomes]
rs928137	0.84[EUR][1000 genomes]
rs928138	0.84[EUR][1000 genomes]
rs959204	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030881	chr8:131801472-132654822	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1028579	chr8:131909872-132497149	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1026579	chr8:131922531-132695045	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2761471	chr8:131963290-132281905	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131997400-132020000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:132001800-132002600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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