Variant report

Variant	rs1329925
Chromosome Location	chr9:18078687-18078688
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1411247	1.00[EUR][1000 genomes]
rs16936268	1.00[EUR][1000 genomes]
rs1778181	1.00[AMR][1000 genomes]
rs35493990	1.00[AMR][1000 genomes]
rs55861840	1.00[EUR][1000 genomes]
rs56065182	1.00[EUR][1000 genomes]
rs56692548	1.00[EUR][1000 genomes]
rs57471476	1.00[EUR][1000 genomes]
rs58033247	1.00[EUR][1000 genomes]
rs59282067	1.00[EUR][1000 genomes]
rs59648908	1.00[EUR][1000 genomes]
rs59741241	1.00[EUR][1000 genomes]
rs60056897	1.00[EUR][1000 genomes]
rs60785805	1.00[EUR][1000 genomes]
rs73420818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73643491	1.00[EUR][1000 genomes]
rs73643495	1.00[EUR][1000 genomes]
rs73645708	1.00[EUR][1000 genomes]
rs947921	1.00[EUR][1000 genomes]
rs947922	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18074400-18080600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:18075000-18085000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:18076600-18080600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:18077600-18080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:18078000-18084400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:18078200-18078800	Weak transcription	Aorta	Aorta

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