Variant report

Variant	rs55861840
Chromosome Location	chr9:18062013-18062014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1329925	1.00[EUR][1000 genomes]
rs1411247	1.00[EUR][1000 genomes]
rs16936268	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065182	1.00[EUR][1000 genomes]
rs56692548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57471476	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58033247	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59282067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59648908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59741241	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59820283	1.00[AMR][1000 genomes]
rs60056897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60785805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61454412	1.00[AMR][1000 genomes]
rs73420818	1.00[EUR][1000 genomes]
rs73643486	1.00[AMR][1000 genomes]
rs73643491	1.00[EUR][1000 genomes]
rs73643495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73643497	0.81[AFR][1000 genomes]
rs73645708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73645710	0.87[AFR][1000 genomes]
rs73645711	0.95[AFR][1000 genomes]
rs73645712	0.87[AFR][1000 genomes]
rs947921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18059200-18063600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:18059800-18063600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:18060600-18071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr9:18061200-18062200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:18061400-18064800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:18061800-18064000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:18061800-18064200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:18061800-18064800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:18062000-18062200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:18062000-18062400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:18062000-18062400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr9:18062000-18063400	Weak transcription	Small Intestine	intestine
13	chr9:18062000-18063600	Weak transcription	Aorta	Aorta

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