Variant report

Variant	rs61454412
Chromosome Location	chr9:18001839-18001840
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12002463	0.83[EUR][1000 genomes]
rs16936268	1.00[AMR][1000 genomes]
rs55861840	1.00[AMR][1000 genomes]
rs56692548	1.00[AMR][1000 genomes]
rs58033247	1.00[AMR][1000 genomes]
rs59282067	1.00[AMR][1000 genomes]
rs59648908	1.00[AMR][1000 genomes]
rs59741241	1.00[AMR][1000 genomes]
rs59820283	1.00[AMR][1000 genomes]
rs60056897	1.00[AMR][1000 genomes]
rs60785805	1.00[AMR][1000 genomes]
rs73643486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73643490	1.00[EUR][1000 genomes]
rs73643492	1.00[EUR][1000 genomes]
rs73643495	1.00[AMR][1000 genomes]
rs73643497	1.00[EUR][1000 genomes]
rs73645708	1.00[AMR][1000 genomes]
rs947921	1.00[AMR][1000 genomes]
rs947922	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892677	chr9:17918806-18002205	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1021862	chr9:17931213-18052101	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv518330	chr9:17965723-18017562	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2752288	chr9:17965723-18036892	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17988200-18004400	Weak transcription	Aorta	Aorta
2	chr9:17995200-18003400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:17995400-18002000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:18001800-18002000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:18001800-18002000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:18001800-18002000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr9:18001800-18003800	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links