Variant report

Variant	rs13299456
Chromosome Location	chr9:7935242-7935243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11794816	0.89[EUR][1000 genomes]
rs13294014	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13294386	0.85[EUR][1000 genomes]
rs1535477	0.89[EUR][1000 genomes]
rs1923531	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2065113	1.00[ASW][hapmap]
rs34542037	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35368441	0.90[EUR][1000 genomes]
rs767956	0.87[EUR][1000 genomes]
rs7856858	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7868963	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs877932	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv471274	chr9:7925381-7953759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv892218	chr9:7929372-7964559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7934800-7935600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr9:7934800-7937400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr9:7935000-7935400	Enhancers	Primary T cells from cord blood	blood
4	chr9:7935000-7935400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr9:7935000-7935400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:7935000-7935400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:7935000-7935400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr9:7935000-7935400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr9:7935000-7935600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr9:7935000-7935600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:7935000-7935600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:7935000-7935600	Enhancers	Dnd41	blood
13	chr9:7935000-7936000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:7935000-7937400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr9:7935000-7937400	Enhancers	Primary B cells from peripheral blood	blood
16	chr9:7935000-7937400	Enhancers	Fetal Thymus	thymus
17	chr9:7935000-7938000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr9:7935200-7935400	Enhancers	Primary B cells from cord blood	blood
19	chr9:7935200-7935400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:7935200-7935600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:7935200-7936400	Enhancers	Fetal Stomach	stomach
22	chr9:7935200-7936800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr9:7935200-7938600	Enhancers	Thymus	Thymus

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