Variant report

Variant	rs1923531
Chromosome Location	chr9:7930888-7930889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11794816	0.92[EUR][1000 genomes]
rs13294014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13294386	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13297029	0.94[AFR][1000 genomes]
rs13299456	0.94[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1535477	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34542037	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34999357	0.85[EUR][1000 genomes]
rs35368441	0.93[EUR][1000 genomes]
rs71507620	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72701819	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs767956	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7856858	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7868963	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs877932	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv471274	chr9:7925381-7953759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv892218	chr9:7929372-7964559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7929600-7931000	Enhancers	Thymus	Thymus
2	chr9:7930200-7931200	Enhancers	Primary T cells from cord blood	blood
3	chr9:7930400-7935000	Weak transcription	Fetal Thymus	thymus
4	chr9:7930600-7931000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr9:7930600-7931000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr9:7930600-7931200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:7930600-7931200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr9:7930800-7931200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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