Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85996640..85999188-chr9:86152643..86154584,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172159	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10117284	0.82[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10125072	0.84[ASN][1000 genomes]
rs11140060	0.88[ASN][1000 genomes]
rs12349789	0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28585601	0.88[ASN][1000 genomes]
rs3849865	0.87[ASN][1000 genomes]
rs3860905	0.84[CHB][hapmap];0.96[JPT][hapmap];0.87[ASN][1000 genomes]
rs3860906	0.88[ASN][1000 genomes]
rs3860907	0.88[ASN][1000 genomes]
rs3860909	0.83[CHB][hapmap];0.96[JPT][hapmap];0.88[ASN][1000 genomes]
rs3860912	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3860913	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3860914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3904187	0.91[JPT][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3904189	0.91[ASN][1000 genomes]
rs4478644	0.91[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4877757	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7019165	0.91[ASN][1000 genomes]
rs7037795	0.88[ASN][1000 genomes]
rs7037928	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:85981000-85997800	Weak transcription	Left Ventricle	heart
4	chr9:85982600-85998800	Weak transcription	Ovary	ovary
5	chr9:85983000-85998400	Weak transcription	Fetal Brain Male	brain
6	chr9:85995400-85997800	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search: