Variant report

Variant	rs3849865
Chromosome Location	chr9:85988740-85988741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10125072	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10125561	0.88[EUR][1000 genomes]
rs11140060	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13299648	0.87[ASN][1000 genomes]
rs2375922	0.84[ASN][1000 genomes]
rs28585601	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860902	0.85[EUR][1000 genomes]
rs3860905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3860906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860909	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3860912	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3860913	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3860914	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3904187	0.84[ASN][1000 genomes]
rs3904189	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4085854	0.89[EUR][1000 genomes]
rs4297106	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4478644	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4877756	0.87[EUR][1000 genomes]
rs4877757	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7019165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7037795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037928	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:85977000-85990200	Weak transcription	Right Ventricle	heart
4	chr9:85977400-85994600	Weak transcription	Pancreas	Pancrea
5	chr9:85977600-85990000	Weak transcription	Spleen	Spleen
6	chr9:85981000-85997800	Weak transcription	Left Ventricle	heart
7	chr9:85982600-85998800	Weak transcription	Ovary	ovary
8	chr9:85983000-85998400	Weak transcription	Fetal Brain Male	brain
9	chr9:85986400-85989200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:85986800-85989200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:85987000-85988800	Enhancers	Fetal Muscle Leg	muscle
12	chr9:85987400-85989200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:85987800-85988800	Enhancers	Fetal Kidney	kidney
14	chr9:85988400-85995600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links