Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10125561	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867997	0.99[ASN][1000 genomes]
rs11140060	0.85[EUR][1000 genomes]
rs2375922	0.87[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs28585601	0.85[EUR][1000 genomes]
rs3849865	0.85[EUR][1000 genomes]
rs3860901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3860905	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs3860906	0.85[EUR][1000 genomes]
rs3860907	0.84[EUR][1000 genomes]
rs3860909	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs3860912	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs3860913	0.81[CEU][hapmap]
rs3860914	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs3904189	0.85[EUR][1000 genomes]
rs4085854	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4297106	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4877756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4877757	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7019165	0.82[EUR][1000 genomes]
rs7037795	0.85[EUR][1000 genomes]
rs7037928	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85923600-85960600	Weak transcription	Right Ventricle	heart
2	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
3	chr9:85942600-85970200	Weak transcription	Psoas Muscle	Psoas
4	chr9:85943400-85961600	Weak transcription	Adipose Nuclei	Adipose
5	chr9:85943400-85964400	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:85946200-85963800	Weak transcription	Fetal Brain Female	brain
7	chr9:85950200-85976000	Weak transcription	HepG2	liver
8	chr9:85954800-85960400	Weak transcription	Lung	lung
9	chr9:85955400-85964000	Weak transcription	Ovary	ovary
10	chr9:85956200-85986600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:85958200-85961800	Weak transcription	NHDF-Ad	bronchial
12	chr9:85958200-85980600	Weak transcription	Left Ventricle	heart
13	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:85958800-85963800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:85959000-85961000	Weak transcription	Spleen	Spleen
16	chr9:85959000-85963800	Weak transcription	Fetal Heart	heart

Quick Search: