Variant report

Variant	rs4297106
Chromosome Location	chr9:85985892-85985893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85985180..85988135-chr9:86151816..86155066,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172159	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10125072	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10125561	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10867997	0.81[ASN][1000 genomes]
rs11140060	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2375922	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs28585601	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3849865	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3860901	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs3860902	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3860905	0.86[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3860906	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3860907	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3860909	0.86[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3860912	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3860913	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs3860914	0.86[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3904189	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4085854	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4478644	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4877756	0.90[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4877757	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7019165	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7037795	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7037928	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7847924	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85956200-85986600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:85977000-85990200	Weak transcription	Right Ventricle	heart
5	chr9:85977400-85994600	Weak transcription	Pancreas	Pancrea
6	chr9:85977600-85990000	Weak transcription	Spleen	Spleen
7	chr9:85981000-85997800	Weak transcription	Left Ventricle	heart
8	chr9:85982000-85987000	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:85982200-85987800	Weak transcription	HepG2	liver
10	chr9:85982400-85987400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:85982400-85987600	Weak transcription	Fetal Stomach	stomach
12	chr9:85982600-85998800	Weak transcription	Ovary	ovary
13	chr9:85983000-85998400	Weak transcription	Fetal Brain Male	brain

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