Variant report

Variant	rs1331096
Chromosome Location	chr9:18185074-18185075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11787635	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1944746	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2183645	0.82[AFR][1000 genomes]
rs4961627	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034518	chr9:18166899-18214878	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18182400-18185400	Enhancers	Fetal Intestine Large	intestine
2	chr9:18182400-18185600	Enhancers	Fetal Intestine Small	intestine
3	chr9:18182400-18185600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr9:18182600-18185400	Enhancers	Fetal Heart	heart
5	chr9:18183200-18185600	Enhancers	Duodenum Mucosa	Duodenum
6	chr9:18183200-18190800	Weak transcription	Aorta	Aorta
7	chr9:18184200-18185600	Enhancers	Stomach Mucosa	stomach
8	chr9:18184400-18185200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:18184400-18188800	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:18184600-18185400	Enhancers	Hela-S3	cervix
11	chr9:18184800-18185400	Enhancers	Small Intestine	intestine
12	chr9:18184800-18186200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:18184800-18190200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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