Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10450716	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849041	0.89[EUR][1000 genomes]
rs11063088	0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs11063089	0.89[EUR][1000 genomes]
rs11063106	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11063131	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12304233	0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs13312762	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13312764	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17782421	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17782469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17782499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3935187	0.89[EUR][1000 genomes]
rs4444158	0.89[EUR][1000 genomes]
rs4636743	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4766233	0.89[EUR][1000 genomes]
rs4766234	0.83[EUR][1000 genomes]
rs4766235	0.89[EUR][1000 genomes]
rs60591544	0.83[EUR][1000 genomes]
rs61006360	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61309048	0.89[EUR][1000 genomes]
rs71583759	0.83[EUR][1000 genomes]
rs7398987	0.89[EUR][1000 genomes]
rs7485543	0.89[EUR][1000 genomes]
rs7958244	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7976596	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4465200-4488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:4486200-4487800	Enhancers	Fetal Intestine Large	intestine
3	chr12:4487000-4487600	Enhancers	Fetal Intestine Small	intestine

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