Variant report

Variant	rs13313783
Chromosome Location	chr2:205830199-205830200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10200237	1.00[AMR][1000 genomes]
rs13384100	0.91[AFR][1000 genomes]
rs13386879	1.00[AMR][1000 genomes]
rs13396044	1.00[AMR][1000 genomes]
rs13396728	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424370	1.00[AMR][1000 genomes]
rs13428786	1.00[AMR][1000 genomes]
rs61001089	0.80[AFR][1000 genomes]
rs61286794	0.83[AFR][1000 genomes]
rs73984429	0.80[AFR][1000 genomes]
rs73984456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984488	0.80[AFR][1000 genomes]
rs73984489	0.80[AFR][1000 genomes]
rs73984492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205814400-205832600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:205820800-205836000	Weak transcription	Fetal Stomach	stomach
3	chr2:205822800-205831800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:205823800-205835000	Weak transcription	Fetal Intestine Large	intestine
5	chr2:205826400-205845400	Weak transcription	HSMM	muscle
6	chr2:205827600-205835800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:205829000-205832000	Weak transcription	Pancreas	Pancrea
8	chr2:205829000-205838800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr2:205829200-205830200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:205829200-205831800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:205829400-205832000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:205829400-205837600	Enhancers	Primary T cells from cord blood	blood
13	chr2:205829600-205830800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:205829600-205837800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr2:205829800-205831800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:205829800-205833000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr2:205830000-205830800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:205830000-205837600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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