Variant report

Variant	rs61286794
Chromosome Location	chr2:205844304-205844305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13313783	0.83[AFR][1000 genomes]
rs55941034	1.00[AMR][1000 genomes]
rs57531270	1.00[AMR][1000 genomes]
rs58416129	1.00[AMR][1000 genomes]
rs59381758	1.00[AMR][1000 genomes]
rs60086789	1.00[AMR][1000 genomes]
rs60446736	1.00[AMR][1000 genomes]
rs61001089	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6713878	1.00[AMR][1000 genomes]
rs6753755	1.00[AMR][1000 genomes]
rs73982523	1.00[AMR][1000 genomes]
rs73982525	1.00[AMR][1000 genomes]
rs73982529	1.00[AMR][1000 genomes]
rs73982531	1.00[AMR][1000 genomes]
rs73982532	1.00[AMR][1000 genomes]
rs73982556	1.00[AMR][1000 genomes]
rs73982587	1.00[AMR][1000 genomes]
rs73982600	1.00[AMR][1000 genomes]
rs73984428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984429	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984430	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984456	0.81[AFR][1000 genomes]
rs73984488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984490	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73984492	0.86[AFR][1000 genomes]
rs7579299	1.00[AMR][1000 genomes]
rs7597714	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205826400-205845400	Weak transcription	HSMM	muscle
2	chr2:205837800-205846800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:205837800-205846800	Weak transcription	NHLF	lung
4	chr2:205838000-205846800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:205838000-205847000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:205838000-205847000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:205838000-205847000	Weak transcription	Left Ventricle	heart
8	chr2:205838000-205847200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:205838400-205846800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:205839600-205847200	Weak transcription	Fetal Lung	lung
11	chr2:205843200-205846800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr2:205843200-205847000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:205843200-205849400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:205843400-205846800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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