Variant report
| Variant | rs60446736 |
|---|---|
| Chromosome Location | chr2:205777637-205777638 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:205775239..205780658-chr2:205780853..205785794,7 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs55941034 | 1.00[AMR][1000 genomes] |
| rs57531270 | 1.00[AMR][1000 genomes] |
| rs58416129 | 1.00[AMR][1000 genomes] |
| rs59381758 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60086789 | 1.00[AMR][1000 genomes] |
| rs61001089 | 1.00[AMR][1000 genomes] |
| rs61286794 | 1.00[AMR][1000 genomes] |
| rs6713878 | 1.00[AMR][1000 genomes] |
| rs6753755 | 1.00[AMR][1000 genomes] |
| rs73982523 | 1.00[AMR][1000 genomes] |
| rs73982525 | 1.00[AMR][1000 genomes] |
| rs73982529 | 1.00[AMR][1000 genomes] |
| rs73982531 | 1.00[AMR][1000 genomes] |
| rs73982532 | 1.00[AMR][1000 genomes] |
| rs73982556 | 1.00[AMR][1000 genomes] |
| rs73982587 | 1.00[AMR][1000 genomes] |
| rs73982600 | 1.00[AMR][1000 genomes] |
| rs73984428 | 1.00[AMR][1000 genomes] |
| rs73984429 | 1.00[AMR][1000 genomes] |
| rs73984430 | 1.00[AMR][1000 genomes] |
| rs73984488 | 1.00[AMR][1000 genomes] |
| rs73984489 | 1.00[AMR][1000 genomes] |
| rs73984490 | 1.00[AMR][1000 genomes] |
| rs7579299 | 1.00[AMR][1000 genomes] |
| rs7597714 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998485 | chr2:205407813-206184006 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv536122 | chr2:205407813-206184006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1010210 | chr2:205489653-206076013 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2757846 | chr2:205539832-205841174 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2759111 | chr2:205539832-205841174 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:205777600-205778200 | Enhancers | K562 | blood |
