Variant report

Variant	rs13314482
Chromosome Location	chr3:156415563-156415564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156407636..156412375-chr3:156415466..156420598,10	K562	blood:
2	chr3:156414309..156416118-chr3:156532502..156534838,2	MCF-7	breast:
3	chr3:156401966..156404393-chr3:156414302..156416945,2	K562	blood:

Variant related genes	Relation type
ENSG00000240875	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1367311	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168247	0.88[ASN][1000 genomes]
rs184695	0.91[ASN][1000 genomes]
rs193197	0.91[ASN][1000 genomes]
rs344018	0.91[ASN][1000 genomes]
rs344067	0.88[ASN][1000 genomes]
rs345986	0.91[ASN][1000 genomes]
rs346003	0.88[ASN][1000 genomes]
rs35161260	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs374341	0.88[ASN][1000 genomes]
rs62277393	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62277394	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289971	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9882795	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13314482	TIPARP-AS1	cis	Artery Tibial	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:156396600-156441000	Weak transcription	Lung	lung
5	chr3:156403400-156421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:156407800-156419600	Weak transcription	Esophagus	oesophagus
7	chr3:156407800-156422000	Weak transcription	Fetal Brain Female	brain
8	chr3:156407800-156423800	Weak transcription	Spleen	Spleen
9	chr3:156407800-156424000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:156407800-156428200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:156409000-156429800	Weak transcription	Gastric	stomach
12	chr3:156409200-156422000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:156409200-156425400	Weak transcription	Colonic Mucosa	Colon
14	chr3:156409400-156422200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:156409400-156425600	Weak transcription	Fetal Brain Male	brain
16	chr3:156409600-156422400	Weak transcription	Fetal Stomach	stomach
17	chr3:156410000-156420400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:156410000-156427400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:156411000-156416800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:156411000-156424200	Genic enhancers	Muscle Satellite Cultured Cells	--
21	chr3:156411200-156416800	Strong transcription	K562	blood
22	chr3:156411200-156417000	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:156411200-156419000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr3:156411400-156415600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:156411400-156416800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr3:156411400-156417000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr3:156411400-156417200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr3:156411400-156417200	Strong transcription	Fetal Thymus	thymus
29	chr3:156411400-156417200	Strong transcription	Dnd41	blood
30	chr3:156411400-156417200	Strong transcription	HepG2	liver
31	chr3:156411400-156417400	Strong transcription	Primary B cells from cord blood	blood
32	chr3:156411400-156419200	Strong transcription	Fetal Intestine Large	intestine
33	chr3:156411400-156419800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:156411400-156426000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:156411600-156416800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:156411600-156417400	Strong transcription	Left Ventricle	heart
37	chr3:156411600-156419200	Strong transcription	GM12878-XiMat	blood
38	chr3:156411600-156419600	Strong transcription	Primary T cells from cord blood	blood
39	chr3:156411600-156422200	Weak transcription	Stomach Mucosa	stomach
40	chr3:156411600-156426000	Strong transcription	HSMMtube	muscle
41	chr3:156411600-156429000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:156411800-156415600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr3:156411800-156416600	Strong transcription	Adipose Nuclei	Adipose
44	chr3:156411800-156416800	Strong transcription	Psoas Muscle	Psoas
45	chr3:156411800-156417200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:156411800-156417400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr3:156411800-156417400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:156411800-156425400	Strong transcription	Hela-S3	cervix
49	chr3:156412000-156417000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr3:156412000-156420200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links