Variant report

Variant	rs346003
Chromosome Location	chr3:156423072-156423073
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156417836..156420595-chr3:156422104..156423993,2	MCF-7	breast:
2	chr3:156413591..156415384-chr3:156421420..156423521,2	K562	blood:
3	chr3:156421711..156423925-chr3:156426591..156428378,2	MCF-7	breast:
4	chr3:156397309..156399430-chr3:156420727..156423184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13314482	0.88[ASN][1000 genomes]
rs1367311	0.88[ASN][1000 genomes]
rs168247	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs184695	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs193197	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs237250	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs343999	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs344003	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs344018	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs344028	0.81[ASN][1000 genomes]
rs344034	0.81[ASN][1000 genomes]
rs344067	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs345985	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs345986	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs374341	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62277393	0.88[ASN][1000 genomes]
rs62277394	0.88[ASN][1000 genomes]
rs7636965	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9882795	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428745	chr3:156405054-156577840	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156394000-156436000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:156395600-156438600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156396400-156424800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:156396600-156441000	Weak transcription	Lung	lung
5	chr3:156407800-156423800	Weak transcription	Spleen	Spleen
6	chr3:156407800-156424000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:156407800-156428200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:156409000-156429800	Weak transcription	Gastric	stomach
9	chr3:156409200-156425400	Weak transcription	Colonic Mucosa	Colon
10	chr3:156409400-156425600	Weak transcription	Fetal Brain Male	brain
11	chr3:156410000-156427400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:156411000-156424200	Genic enhancers	Muscle Satellite Cultured Cells	--
13	chr3:156411400-156426000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:156411600-156426000	Strong transcription	HSMMtube	muscle
15	chr3:156411600-156429000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:156411800-156425400	Strong transcription	Hela-S3	cervix
17	chr3:156412400-156429400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:156412600-156429200	Strong transcription	HSMM	muscle
19	chr3:156414400-156423800	Weak transcription	Fetal Lung	lung
20	chr3:156414800-156426600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:156416000-156437000	Weak transcription	Pancreas	Pancrea
22	chr3:156416000-156443000	Weak transcription	Aorta	Aorta
23	chr3:156417000-156430400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr3:156417400-156423600	Weak transcription	Left Ventricle	heart
25	chr3:156418000-156425600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr3:156418200-156424400	Strong transcription	NHDF-Ad	bronchial
27	chr3:156418400-156428600	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:156418800-156428600	Strong transcription	HUVEC	blood vessel
29	chr3:156419000-156426400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr3:156419400-156424400	Strong transcription	Dnd41	blood
31	chr3:156419800-156433800	Weak transcription	Esophagus	oesophagus
32	chr3:156420200-156423400	Genic enhancers	A549	lung
33	chr3:156420200-156424400	Strong transcription	K562	blood
34	chr3:156420400-156424200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:156420400-156424400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:156420400-156424400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr3:156420400-156426000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:156420600-156423800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr3:156420600-156424200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:156420600-156424200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr3:156420600-156424800	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:156420600-156428600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:156420600-156429800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:156420800-156423400	Strong transcription	Right Ventricle	heart
45	chr3:156420800-156424600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:156420800-156427400	Strong transcription	Fetal Thymus	thymus
47	chr3:156420800-156428000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:156420800-156428800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr3:156420800-156429000	Strong transcription	NHEK	skin
50	chr3:156420800-156429200	Strong transcription	NH-A	brain

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